Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1 104 3e-17 >seq1 Length=2540030 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||||||||| | | ||| ||||| || | ||||| ||||| || || ||||| ||| Sbjct 1523335 ACCTCCTCTGAGCCTCAAAACCAAGTGAAGCGTGCTTTCCTTCTGGATGTTGTAGTCACT 1523394 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || ||||| | || |||| |||||||||||| ||||| | | ||| ||||| | || Sbjct 1523395 CAAAGTCCTACCATCCTCTAACTGCTTACCAGCAAATATCAACCTCTGTTGGTCTGGAGG 1523454 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | ||||| ||| ||| | || | || | || | | ||||||||| | || | Sbjct 1523455 AATTCCTTCCTTATCC-TGAATCTTAGCCTTAACATTCTCTATCGTGTCGCTAGGCTCAA 1523513 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | |||| || || || ||||| || || || || ||||| |||||||| Sbjct 1523514 CCTCGAGGGTTATAGTCTTGCCAGTGAGGGTTTTAACAAAAATTTGCAT 1523562 Score = 96.9 bits (106), Expect = 4e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||||||||| | | | ||| ||||| | ||||||||||| || |||||||| ||| Sbjct 1523563 ACCTCCTCTGAGTCTAAGCACTAAATGTAGGGTGCTCTCCTTCTGGATATTGTAGTCACT 1523622 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || | | || ||||||||||||||||| ||||| | | ||| ||||| | || Sbjct 1523623 GAGTGTTCTACCATCCTCTAGCTGCTTACCAGCAAATATCAACCTCTGTTGGTCTGGAGG 1523682 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | ||||| ||| ||| | || | || | || | | ||||||||| | || | Sbjct 1523683 AATTCCTTCCTTATCC-TGAATCTTAGCCTTAACATTCTCTATCGTGTCGCTAGGCTCAA 1523741 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 | |||| || || ||||| || |||| || || || || || ||||| || Sbjct 1523742 CCTCGAGGGTTATAGTTTTTCCTGTTAAAGTTTTGACGAATATCTGCATATT 1523793 Score = 89.7 bits (98), Expect = 6e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 || ||||| | || || |||||||| || ||||| ||| || ||||| | || ||| Sbjct 2214247 ACTAAATGAAGGGTACTTTCCTTTTGGATGTTGTAGTCACTCAAAGTCCTACCATCCTCT 2214306 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 | |||||||||||| ||||| | | ||| ||||| | || | || ||||| | | || Sbjct 2214307 AACTGCTTACCAGCAAATATCAACCTCTGTTGGTCTGGAGGGATGCCTTCCTTAT-CTTG 2214365 Query 42120 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 | | || | || | || | | ||||||||| | || || |||| || || ||||| Sbjct 2214366 AATCTTAGCCTTAACATTCTCTATCGTGTCGCTAGGCTCAACCTCGAGGGTTATAGTTTT 2214425 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || |||| || || || || |||||||| || Sbjct 2214426 TCCTGTTAAAGTTTTGACGAATATTTGCATCTT 2214458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212738888560