Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 5e-13 >seq1 Length=2540030 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || ||||| | || |||||||| | | | |||||||| ||||||||||| ||| Sbjct 2214229 CCACCACGCAACCTCAGTACTAAATGAAGGGTACTTTCCTTTTGGATGTTGTAGTCACTC 2214288 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | ||||| | || ||||| | | | || | | ||||||||| ||||| Sbjct 2214289 AAAGTCCTACCATCCTCTAACTGCTTACCAGCAAATATCAACCTCTGTTGGTCTGGAGGG 2214348 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| || || ||| | || | |||| | || | |||||| | | ||| || Sbjct 2214349 ATGCCTTCCTTATC-TTGAATCTTAGCCTTAACATTCTCTATCGTGTCGCTAGGCTCAAC 2214407 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | ||||| || || | |||||| || || || ||||| Sbjct 2214408 CTCGAGGGTTATAGTTTTTCCTGTTAAAGTTTTGACGAATATTTGCAT 2214455 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 138424 TCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAG 138483 ||||| || ||||||||||| |||| ||| | ||||| | || ||||| | | | Sbjct 1523372 TCCTTCTGGATGTTGTAGTCACTCAAAGTCCTACCATCCTCTAACTGCTTACCAGCAAAT 1523431 Query 138484 ATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTG 138542 || | | ||||||||| ||||| || ||||| || || ||| | || | |||| | Sbjct 1523432 ATCAACCTCTGTTGGTCTGGAGGAATTCCTTCCTTATC-CTGAATCTTAGCCTTAACATT 1523490 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | |||||| | | ||| ||||||| || | || || ||||| || ||||| || Sbjct 1523491 CTCTATCGTGTCGCTAGGCTCAACCTCGAGGGTTATAGTCTTGCCAGTGAGGGTTTTAAC 1523550 Query 138603 AAAAATCTGCAT 138614 |||||| ||||| Sbjct 1523551 AAAAATTTGCAT 1523562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262344170480