Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1 114 1e-20 >seq1 Length=2540030 Score = 114 bits (126), Expect = 1e-20 Identities = 172/242 (71%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 45102 TTTTA--TTTTATT-CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGG 45158 ||||| |||||| ||||| | ||||||||| || | || ||||| |||||| ||| Sbjct 1523321 TTTTAACTTTTATAACCTCCTCTGAGCCTCAAAACCAAGTGAAGCGTGCTTTCCTTCTGG 1523380 Query 45159 ATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGT 45218 || || || || || | || || ||| || || || || || || ||||||| | Sbjct 1523381 ATGTTGTAGTCACTCAAAGTCCTACCATCCTCTAACTGCTTACCAGCAAATATCAACCTC 1523440 Query 45219 TGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTG 45278 || ||||| || ||||| ||||| ||||| ||||| || || | |||| ||| Sbjct 1523441 TGTTGGTCTGGAGGAATTCCTTCCTTATCCTGAATCTTAGCCTTAACATTCTCTATCGTG 1523500 Query 45279 TCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGC 45338 ||| || ||| || ||||| || | || ||||| || || ||||| |||||||||||| Sbjct 1523501 TCGCTAGGCTCAACCTCGAGGGTTATAGTCTTGCCAGTGAGGGTTTTAACAAAAATTTGC 1523560 Query 45339 AT 45340 || Sbjct 1523561 AT 1523562 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || | ||||| |||| ||| || || |||||||||||| || || || Sbjct 2214226 ATTCCACCACGCAACCTCAGTACTAAATGAAGGGTACTTTCCTTTTGGATGTTGTAGTCA 2214285 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | || || ||| || || || || || || ||||||| | || ||||| || Sbjct 2214286 CTCAAAGTCCTACCATCCTCTAACTGCTTACCAGCAAATATCAACCTCTGTTGGTCTGGA 2214345 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || |||||||| ||||||||||| || || | |||| |||||| || ||| Sbjct 2214346 GGGATGCCTTCCTTATCTTGAATCTTAGCCTTAACATTCTCTATCGTGTCGCTAGGCTCA 2214405 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | ||||| || |||| |||||| || || ||||||||| Sbjct 2214406 ACCTCGAGGGTTATAGTTTTTCCTGTTAAAGTTTTGACGAATATTTGCATC 2214456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003149149640