Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3 167 3e-36 >seq3 Length=1317241 Score = 167 bits (184), Expect = 3e-36 Identities = 568/871 (65%), Gaps = 22/871 (3%) Strand=Plus/Plus Query 116170 TACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGA 116229 |||||||| ||||||||||| ||| | | | |||||||| || || |||| | | Sbjct 1115612 TACATTGTTTCAAAAATGCGTTTATTAAGTTCTCGAGCCTCGTCTGACTCGAACGGGT-A 1115670 Query 116230 CGGCACAAA-ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCT 116288 | ||| | || || ||| || || ||||| || || | || || || | |||||| Sbjct 1115671 CCGCATTAGCATGAAGGTATCTGCTAGGCCTTGTACCCCAACACCCATCGGTCTATGTCT 1115730 Query 116289 CATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAG 116348 | |||||| | || | ||| || || ||||||| || || || |||| || Sbjct 1115731 GAAATTAGAAACCCTGGCTTGTTTCACAGGGTAGTAATTCCTGTCAATTACTTTATTAAG 1115790 Query 116349 ATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC 116408 || | |||| || |||||||| || |||| | |||| || | || |||| Sbjct 1115791 GTTATAAGTGATTACACGGCAGATTTCATAGAGTTTTTTGAAATCGAATGTCCGTGTCTG 1115850 Query 116409 TTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT 116468 || ||| |||| || || || | ||| || | ||||||||| | ||| ||||| Sbjct 1115851 CGTGTTAACAAACTTTGGCAGCGCTACTGAAGCTAAATTACACACTGCAACCTCGTCCTT 1115910 Query 116469 ATCAGTGTACTCTATAATTTCCGTACACAAATT--TGAACTCTTAATGGTGCCCAAGTTC 116526 | ||| | | | ||||| || | || || | | |||| |||||||| ||| Sbjct 1115911 GTTTGTGAATTGGACGATTTCACAGCAGAGGTTACTGGATT--TAATAGTGCCCAAATTC 1115968 Query 116527 TTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCC 116586 | || || ||| | |||||| || |||||||| | ||| || || || || ||||| Sbjct 1115969 TGCTGGTTACTCTTAGCGTTACATGCGTCCTTGTATAACATGTACGGAGTGCCAGTCTCG 1116028 Query 116587 GTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCG 116645 ||||||||| |||||| || ||| | | || | |||||| | || | || | || Sbjct 1116029 ATTTGGGACTGGAGAATTGCAAACCACAACTTCTG-GGCTGGGATTGT--CTTTCG-TCC 1116084 Query 116646 C---CCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGA 116702 | |||| || ||| |||| || || | |||||||| || ||| | |||| Sbjct 1116085 CAAGCCCTGCTGCTCATACTGAGTATACAAACGTTCAAACTCGTCTCCCCAAACCTCGTG 1116144 Query 116703 GAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTT 116762 || ||| || ||||||||| | || | ||| | | ||||||| || || Sbjct 1116145 CAGACCTCTACACTCATCTGGACACATCAGTGTCCAATTCTTATTTGCCTCAACTCGTTT 1116204 Query 116763 CATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCT--TCTTCA 116820 |||||| |||||||||||||| ||||| |||| | ||||| || ||| ||||| Sbjct 1116205 CATGAACAGGTCTGGGATCCACAGCGCGTAGAATAAATCCC--TTGCACGCTGGTCTTCT 1116262 Query 116821 TCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGG 116880 | || || || | | || || || | | |||||||| ||||| || ||||| Sbjct 1116263 GCGCCGTGGTTTTTCCTGAGATCTAACAACTTGAAAATATCCGCATGCCAAGGCTCCAGA 1116322 Query 116881 TACACCGCGATTGACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCG 116937 || | ||| | ||| || || || | |||| | |||| || ||| | ||||| ||| Sbjct 1116323 TATATCGCAAATGAGCCTTTACGTTTTCCACCACCTTGGTCCACGTACTTGGCCGTCGCG 1116382 Query 116938 TTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGA 116997 ||||||| ||||| || | ||| || | || ||| || || |||| ||| Sbjct 1116383 TTAAATATCTTCAGCATGGGCACGATCCCGTTGGAAATGCCGTTGGTGCCCCTAATGTAT 1116442 Query 116998 GACTTGTTGGCTCTGACATCGTGGATGTGCA 117028 || | ||||||||| | ||| || |||| Sbjct 1116443 GATCCGCTGGCTCTGATTTTGTGAAT-TGCA 1116472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507130980440