Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 1e-14 >seq1 Length=2540030 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | | ||| |||| || | || || ||||| ||||| |||||||| Sbjct 1523336 CCTCCTCTGAGCCTCAAAACCAAGTGAAGCGTGCTTTCCTTCTGGATGTTGTAGTCACTC 1523395 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||| | | || || | |||||| || || |||||||| | ||| ||||| | || Sbjct 1523396 AAAGTCCTACCATCCTCTAACTGCTTACCAGCAAATATCAACCTCTGTTGGTCTGGAGGA 1523455 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||| ||| ||||| ||| | || | | ||||||||| | || || Sbjct 1523456 ATTCCTTCCTTATCCTGAATCTTAGCCTTAACATTCTCTATCGTGTCGCTAGGCTCAACC 1523515 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | || || || ||||| || || ||||||||||| |||||||| Sbjct 1523516 TCGAGGGTTATAGTCTTGCCAGTGAGGGTTTTAACAAAAATTTGCAT 1523562 Score = 93.3 bits (102), Expect = 5e-14 Identities = 162/234 (69%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | | | ||| | ||| | || |||||||| |||||||||||||| | Sbjct 1523564 CCTCCTCTGAGTCTAAGCACTAAATGTAGGGTGCTCTCCTTCTGGATATTGTAGTC--AC 1523621 Query 46427 AGAGTGCGCT--CGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 ||||| || | || || |||||||| || || |||||||| | ||| ||||| | | Sbjct 1523622 TGAGTGTTCTACCATCCTCTAGCTGCTTACCAGCAAATATCAACCTCTGTTGGTCTGGAG 1523681 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||||| ||| ||||| ||| | || | | ||||||||| | || | Sbjct 1523682 GAATTCCTTCCTTATCCTGAATCTTAGCCTTAACATTCTCTATCGTGTCGCTAGGCTCAA 1523741 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGC 46598 | || | || || ||||| || || | ||||| || || || ||||| |||| Sbjct 1523742 CCTCGAGGGTTATAGTTTTTCCTGTTAAAGTTTTGACGAATATCTGCATATTGC 1523795 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 ||||| ||||||||||| |||||||| | ||| | | || || | |||||| || Sbjct 2214259 GTACTTTCCTTTTGGATGTTGTAGTCACTCAAAGTCCTACCATCCTCTAACTGCTTACCA 2214318 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 || |||||||| | ||| ||||| | || | || ||||| || ||||| ||| Sbjct 2214319 GCAAATATCAACCTCTGTTGGTCTGGAGGGATGCCTTCCTTATCTTGAATCTTAGCCTTA 2214378 Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 | || | | ||||||||| | || || || | || || ||||| || || | ||| Sbjct 2214379 ACATTCTCTATCGTGTCGCTAGGCTCAACCTCGAGGGTTATAGTTTTTCCTGTTAAAGTT 2214438 Query 46577 TTAACAAAGATTTGCATTTTG 46597 || || || |||||||| ||| Sbjct 2214439 TTGACGAATATTTGCATCTTG 2214459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238336410680