Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq2 172 4e-37 >seq2 Length=1971884 Score = 172 bits (190), Expect = 4e-37 Identities = 905/1421 (64%), Gaps = 38/1421 (3%) Strand=Plus/Minus Query 517258 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 517317 ||| || || || | |||||||| || || | || || ||||||||||||||||| || Sbjct 302084 GGCGGTGACGTTCAAGATACCATTTGCGTCAATGTCGAAGGTGACTTCAATTTGAGGAAC 302025 Query 517318 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 517377 ||||| |||| || | ||| ||| | | || |||| || || || || || Sbjct 302024 ACCTCTTGGAGCGGGAGCGATTCCTGTTAGGTGGAACTTTCCGAGCAAGTTGTTGTCCTT 301965 Query 517378 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 517437 || | | |||||||| || || | || || ||| | ||| |||| | Sbjct 301964 GGTCATTGCACGTTCACCTTCAAACACCTGAATCAAAACACCTTCTTGCCTATCCTCGTT 301905 Query 517438 AGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGG 517496 ||||| || | | ||| | || || || || ||||||||||| | || | | Sbjct 301904 GGTTGTGAAGATT-TGGTTCTTCTTGGTTGGGATGGTTGTGTTTCTCTTGATCAAGACAG 301846 Query 517497 TCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGA-CA 517555 |||||| ||||||||| ||||| |||||||| || | |||| |||||| | |||| || Sbjct 301845 TCATAACACCACCTGCGGTTTCCAAACCAAGCGACAATGGAGCGACATCCAACAGGAGCA 301786 Query 517556 ATATTTTGAAGTTTTTCAT-CAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACC 517614 || | || | || ||| | | || | |||||| | || ||||| | || ||||| Sbjct 301785 AT-TCCTGGATCTTCTCAGACTGGTTTCCAGACAAGA-TGGCGGCTTGGACTGCTGCACC 301728 Query 517615 ATATGCAACAGCTTCATCAGGATTAACAGT--TTCATTTAGTTTTTTACCATTGAAAAAA 517672 || ||||| ||||| || || || | | | ||| | | || || ||||| || Sbjct 301727 GTAGGCAACTGCTTCGTCTGGGTTGATTGACCTGCATG--GCTCCTTTCCGTTGAAGAAG 301670 Query 517673 TT-TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTC 517731 || | | || | | | | ||| ||||| | | ||| || ||||| || | ||| Sbjct 301669 TTCTTGATGAGGGTTTGG-ATCTTGGGAATTCTGGTACTTCCACCGACTAACACGACTTC 301611 Query 517732 ATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACC 517791 || | | || || ||| ||| | | | || ||||| || | || Sbjct 301610 GTGGATGCTTCTCTTGTCAAGTCCTGAGGACTCAAGTGCCTTCTCAACTGGAACCAGTGT 301551 Query 517792 CGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATA 517851 ||| ||| || ||| || || ||||| | || || ||| ||| || || Sbjct 301550 GCTTCTGAACTTCTCGTTACAGAGCTCCTCGAACCTTGCCCTGCTAATGGTGGTGTTGTA 301491 Query 517852 ATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGC 517911 ||||| || ||| | | ||| || | |||||| || | || || || || ||| | Sbjct 301490 GTCAATGCCCTCGTATAGAGAGTCGAGTTCAATGGTGGCCTGGGTTGAGCTTGAGAGTAC 301431 Query 517912 ACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAA 517971 | || ||||||||||| ||||||||||| | || ||| | || ||||| | Sbjct 301430 TCTCTTTGCACGTTCACAGTGGGTCCTTAGTCTCCTTAGAGCTCTCT-TGTTTGATG-AG 301373 Query 517972 ATCTGTTTTATATTTT-----CTCTTGAAATCTTCAACACACCATGTTA---CAAGACGA 518023 || | ||| ||| | | | |||| || ||||| || | ||||| | Sbjct 301372 ATGTTCTTTCCATTGTTCAAGCGCATGAAGTCGCGGACACAG--TGCTCGACCAAGAGG- 301316 Query 518024 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 518083 || ||||| ||||| || ||||| | ||||| |||| || || | |||| ||| | Sbjct 301315 TTGTCAAAGTCTTCTCCACCCAAGTGAGTATCACCTGCTGTGGCCTTGACTTCGAAGATA 301256 Query 518084 CCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGT 518143 |||||||| | | ||| | | ||||| ||| |||||||||| ||| || || | Sbjct 301255 CCATCTTCTATGGTCAATATGCTAACATCGAAGGTACCACCACCCAAATCGAATATTAAA 301196 Query 518144 ACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 518203 || ||| | || | | || ||||| | ||| || || | || || |||||||| Sbjct 301195 ACGTTCTTCTCACCGCCGCCCTTCTTATCTAAACCGTAGGCTATGGCTGCTGCAGTTGGC 301136 Query 518204 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 518263 || || || || |||| ||||| || || || || |||| || || || || |||||| Sbjct 301135 TCGTTGATGATCCTCATGACATTGAGTCCGGCTATGGTTCCGGCGTCCTTGGTTGCTTGT 301076 Query 518264 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTAC-TTCTTTACC 518322 ||||| || ||||| || || || ||||| || || ||| | || | || ||||| || Sbjct 301075 CTTTGAGAGTCGTTGAAGTAGGCTGGAACGGTGATGACGACGTCCTTGACGCTCTTTCCC 301016 Query 518323 AATATAAGCGCTT--GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 518380 || || |||| || ||| ||||| || | | | ||| || || || | ||| Sbjct 301015 AA---AAAGGCTTCGGCTATTTCCTTCATCTTGGTAAGGACCATGGAGGATATCTCCTCT 300959 Query 518381 --GGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTT---ATTAC 518435 | |||| | ||| |||| ||| | | ||||||| | || || || Sbjct 300958 GCGTGGAAGGT--CTTCTTTTCACCTTGGAAGGTCACTTCAATGTTCGGCTTTCCGTTTG 300901 Query 518436 CAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAA 518495 | || ||||||| |||||||||| ||||| || || || || ||| | || Sbjct 300900 GTCCGTTGGTAACTTTGAATGGCCAGTGCTTCATGTCCTCCTGGACTGTTCTGTCGTCAA 300841 Query 518496 AATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTT 518555 | | || ||||| | | || || || ||||| || || ||| ||| || ||| Sbjct 300840 ACTTCCTGCCAATGAGCCTCTTGGCGTCGAAAATTGTGTTTTCTGGGTTACGGGCTTCTT 300781 Query 518556 GATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAG 518615 | | ||| ||||| || || || | ||| || || || |||| || || || || | Sbjct 300780 GGTTTTTTGCTGCGTCACCGATTAATCTTTCGGTGTCAGTGAATGCGACGTAGGACGGCG 300721 Query 518616 TTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTA 518656 |||| | || || || ||||| | || ||||| || ||| Sbjct 300720 TTGTCCTGTTTCCCTGGTCATTTGGGATGATTTCTACGTTA 300680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780821953390354