Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2 313 3e-80 seq8 132 6e-26 >seq2 Length=1971884 Score = 313 bits (346), Expect = 3e-80 Identities = 1071/1639 (65%), Gaps = 54/1639 (3%) Strand=Plus/Minus Query 6565 CTTTTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTT 6624 ||| || || || || || ||||| || || || | ||||| | ||||| ||||| | Sbjct 302207 CTTCTCGTCCTCCTCCTTGTACTTCTCAGCCTCCTCAACCATTCTGTCAATTTCTTCCTG 302148 Query 6625 CGATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATC 6684 || | ||||| || || || || || | | ||| || || || | | ||| || Sbjct 302147 GCTCAAGCGGCCCTTGTCGTTGGTGATGGTGACGTGTTCCGACTTTCCAGTCGACTTGTC 302088 Query 6685 TTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGG 6744 || | || ||||| ||||||||||| |||| ||||| | || | |||||| || Sbjct 302087 CATGGCGGTGACGTTCAAGATACCATTTGCGTCAATGTCGAAGGTGACTTCAATTTGAGG 302028 Query 6745 TGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATC 6804 ||| || || |||| | || || |||| | || | || || || |||| || Sbjct 302027 AACACCTCTTGGAGCGGGAGCGATTCCTGTTAGGTGGAACTTTCCGAGCAAGTTGTTGTC 301968 Query 6805 CGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTG 6864 | | | | | ||||||||||||| | || | ||| || | ||| |||| | Sbjct 301967 CTTGGTCATTGCACGTTCACCTTCAAACACCTGAATCAAAACACCTTCTTGCCTATCCTC 301908 Query 6865 TGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGG 6924 |||| ||||||||| | ||||| | ||| || || || |||||| || | Sbjct 301907 GTTGGTTGTGAAGATTTGGTTCTTCTTGGTTGGGATGGTTGTGTTTCTCTTGATCAAGAC 301848 Query 6925 GGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAA 6984 ||||||| |||||| ||||| | ||||| |||| || | || ||||| || | Sbjct 301847 AGTCATAACACCACCTGCGGTTTCCAAACCAAGCGACAATGGAGCGACATCCAACAGGAG 301788 Query 6985 CAGGTCTTGAA------CAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGT 7038 || || || | |||| | ||| || || ||||||||||||||||| | Sbjct 301787 CAATTCCTGGATCTTCTCAGACTGGTTTCCAG-AC-----AAGATGGCGGCTTGGACTGC 301734 Query 7039 CGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAA 7098 || ||||| || || || || || ||||| || | | | || || ||||| || Sbjct 301733 TGCACCGTAGGCAACTGCTTCGTCTGGGTTGATTGACCTGCATGGCTCCTTTCCGTTGAA 301674 Query 7099 ATAATCC--GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACG 7156 | | | ||| | || || || || || |||| || ||||||||| || ||| Sbjct 301673 GAAGTTCTTGATGAGGGTT--TGGATCTTGGGAATTCTGGTACTTCCACCGACTAACACG 301616 Query 7157 ATTTCATTCA--CTT-TCGATTTATCGATCTTTGAGT-CTCGAAGTGTTTTTTCGACAGG 7212 | ||| | | ||| || || || | |||| ||| ||||| || || || || Sbjct 301615 ACTTCGTGGATGCTTCTC---TTGTCAAGTCCTGAGGACTC-AAGTGCCTTCTCAACTGG 301560 Query 7213 TTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGA 7272 ||| | | |||| || |||| || ||||| || | ||| | | |||||| Sbjct 301559 AACCAGTGTGCTTCTGAACTTCTCGTTACAGAGCTCCTCGAACCTTGCCCTGCTAATGGT 301500 Query 7273 TGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCG---T 7329 || | | | |||| ||| ||||||| || || | ||||||||| | || | | | Sbjct 301499 GGTGTTGTAGTCAATGCCCTCGTATAGAGAGTCGAGTTCAATGGTGGCCTGGGTTGAGCT 301440 Query 7330 CGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGG 7389 || || || || |||||| || ||||| || | || | | || || | | Sbjct 301439 TGA-GAGTAC--TCTCTTTGCACGTTCACAGTGGGTCCTTAGTCTCCTTAGAGCTCTCTT 301383 Query 7390 GTTACCGGAAATAT-CTTTCTTATGTTTA--CGTTTAAACTCTTCAGAGA-AGTG-TCGA 7444 ||| || || | ||||| |||| | || | || || | || | |||| |||| Sbjct 301382 GTTTGATGAGATGTTCTTTCCATTGTTCAAGCGCATGAAGTCG-CGGACACAGTGCTCGA 301324 Query 7445 --AGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGA 7502 | ||| | || || ||||| ||||||||||| ||||| || || || || |||| Sbjct 301323 CCAAGAGGTTG---TCAAAGTCTTCTCCACCCAAGTGAGTATCACCTGCTGTGGCCTTGA 301267 Query 7503 CTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGT 7562 |||| |||||||| |||| ||| | || | |||||| || ||||||||||||| | Sbjct 301266 CTTCGAAGATACCATCTTCTATGGTCAATATGCTAACATCGAAGGTACCACCACCCAAAT 301207 Query 7563 CAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCG 7622 | || || | |||||| | || || | |||||||| | |||||| || || || | Sbjct 301206 CGAATATTAAAACGTTCTTCTCACCGCCGCCCTTCTTATCTAAACCGTAGGCTATGGCTG 301147 Query 7623 CCGCCGTTGGTTCATTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCT 7681 | || ||||| || || || || | | |||| || || || || || ||| | || || Sbjct 301146 CTGCAGTTGGCTCGTTGATGATCCTCATGACA-TTGAGTCCGGCTATGGTTCCGGCGTCC 301088 Query 7682 TTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTG 7741 || || ||||||| ||| || ||||| |||||||| || || || | ||| ||||| || Sbjct 301087 TTGGTTGCTTGTCTTTGAGAGTCGTTGAAGTAGGCTGGAACGGTGATGACGACGTCCTTG 301028 Query 7742 ACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAA 7801 || |||| || | | | | ||| || || || ||||| |||||||| ||||| || || Sbjct 301027 ACGCTCTTTCCCAAAAAGGCTTCGGCTATTTCCTTCATCTTGGTAAGGACCATGGAGGAT 300968 Query 7802 ATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTA 7861 ||||| || || || ||| ||||||| | || |||||||| | || || Sbjct 300967 ATCTCCTCTGCGTGGAAGGTCTTCTTTTCACCTTGGAAGGTCACTTCAATGTTCGGCTT- 300909 Query 7862 TCCG-CAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTT- 7919 |||| | ||| | |||| || | | ||| | ||||| || || |||| ||||| Sbjct 300908 TCCGTTTGGTCCGTTGGTAACTTTGAATGGCCAGTGCTTCATGTCCTCCTGGA-CTGTTC 300850 Query 7920 GGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCA 7979 ||| |||||| || || || || | ||| || || |||| |||||||| ||||| Sbjct 300849 TGTCGTCAAACTTCCTGCCAATGAGCCTCTTGGCGTCGAAAATTGTGTTTTCTGGGTTAC 300790 Query 7980 TGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGA 8039 |||| |||||| || || ||||| ||||| | | ||| | || || || |||| Sbjct 300789 GGGCTTCTTGGTTTTTTGCTGCGTCACCGATTAATCTTTC---GGTGTCAGTGAATGCGA 300733 Query 8040 CGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTT 8099 |||| || || || || | || || ||||| || | || ||||||||| | || | Sbjct 300732 CGTAGGACGGCGTTGTCCTGTTTCCCTGGTCATTTGGGATGATTTCTACGTTATTGTCCT 300673 Query 8100 GCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGCTTG---AGTCA 8156 | || | || || || || || || || || ||||| || |||||| | |||| Sbjct 300672 TGTATACCGCCACACAGGAGTATGTGGTACCCAAGTCAATTCCAATTGCTGGTCCTGTCA 300613 Query 8157 T-TTTATATATTTTGTACA 8174 | |||| || | || |||| Sbjct 300612 TCTTTAAATCTATTCTACA 300594 Score = 109 bits (120), Expect = 7e-19 Identities = 280/424 (66%), Gaps = 3/424 (1%) Strand=Plus/Plus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| | || || || ||| || || | ||||||||| |||| || |||| ||| Sbjct 1505864 TCATCCTGCTCCTTGTAGTTTGAGGCCTCCTTGACCATCTTCTCAACTTCCTCTTCTGAT 1505923 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 || | | ||| | | || ||| || |||| | || |||| || ||| || | Sbjct 1505924 AAAC-CGCCTGAGCTTTG--AATTGTGATCTCCTGCCTCTTTCCCGTGGACTTGTCAACT 1505980 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 ||| | |||| ||| || || || ||||| ||||| | || | |||||| || | Sbjct 1505981 GCAGAGATGTTCATAATGCCGTTGGCGTCAACGTCGAAGGTAACTTCAATTTGAGGAACA 1506040 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 ||||||||||| | ||| ||||| | |||||| || || | ||| || | Sbjct 1506041 CCCCTCGGTGCTGGTGGGATACCAACAAGGTCAAATTGGCCCAGAAGTTGGTTGTCAGCT 1506100 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 ||| | ||||||||||| || || ||||| ||| || ||| ||||| ||| Sbjct 1506101 GCCATTCCACGTTCACCTTGGTATACCTTAATACCCACTTGAGTTTGGTTATCAGCTGCA 1506160 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 ||||||||||| ||| ||||| | || || || || || || ||||| | || Sbjct 1506161 GTTGAGAAGATCTGTGACTTCTTTGTAGGTATGGTGGTGTTCCTGTTAATAAGCCTCGTA 1506220 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 | | ||| |||| ||| || | || ||||| | || |||||||| ||||| ||| Sbjct 1506221 AACACACCTCCCAAAGTCTCAATACCGAGAGATAATGGACACACGTCCAGTAGTAAAAGG 1506280 Query 6989 TCTT 6992 |||| Sbjct 1506281 TCTT 1506284 >seq8 Length=1835834 Score = 132 bits (146), Expect = 6e-26 Identities = 213/303 (70%), Gaps = 5/303 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || ||||| || ||||||||||| || || | ||||| |||||||||||| ||| Sbjct 1354327 TCAAAGTCTTCTCCTCCCAAGTGTGTGTCTCCGCCCGTCGCAATGACTTCAAAGACACCG 1354386 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || | | | || | || || || || |||||||| || ||||| | | || | | Sbjct 1354387 CTGTCGAGGCTCAAAAGTGATACGTCGAAGGTACCACCTCCGAGGTCGTAGACTAGGATG 1354446 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || | || ||| ||| |||| || | |||||| || || || || || ||||| ||| Sbjct 1354447 TTACTCTCCTCG---TTGGTCTTGTCAATACCGTAGGCTATTGCTGCTGCTGTTGGCTCA 1354503 Query 7637 TTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 ||||| || | || |||| | ||||| ||||| ||| | || || ||||| | || | Sbjct 1354504 TTAATGATCCTGATGACA-TCTAGGCCTGCAATTGTTCCTGCGTCCTTCGTGGACTGCCT 1354562 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || || ||||| |||||||| ||||| || | | || | | |||| | ||| || | Sbjct 1354563 CTGAGAGTCGTTGAAGTAGGCTGGGACTGTGATAATTGCCTTCTTGACCTCCTTGCCTAA 1354622 Query 7756 ATA 7758 ||| Sbjct 1354623 ATA 1354625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132728547560