Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq3 107 2e-18 >seq3 Length=1317241 Score = 107 bits (118), Expect = 2e-18 Identities = 527/827 (64%), Gaps = 19/827 (2%) Strand=Plus/Plus Query 110226 GATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAG 110285 |||||||| |||||| | | ||||||| || |||| | | || ||| | || || || Sbjct 1115812 GATTTCATAGAGTTTTTTGAAATCGAATGTCCGTGTCTGCGTGTTAACAAACTTTGGCAG 1115871 Query 110286 AGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTC 110345 || | || || | ||| ||||| | | |||||| |||| ||| ||| | ||||| Sbjct 1115872 CGCTACTGAAGCTAAATTACACACTGCAACCTCGTCCTTGTTTGTGAATTGGACGATTTC 1115931 Query 110346 CGTACACAAGTTGGAACTC---TTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTT 110402 || | ||| ||| ||||| ||||| |||| ||| || || | ||| Sbjct 1115932 ACAGCAGAGGTT---ACTGGATTTAATAGTGCCCAAATTCTGCTGGTTACTCTTAGCGTT 1115988 Query 110403 GCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGC 110462 ||||| ||||| || | |||||| || || ||||| || | || |||| |||||| || Sbjct 1115989 ACATGCGTCCTTGTATAACATGTACGGAGTGCCAGTCTCGATTTGGGACTGGAGAATTGC 1116048 Query 110463 CTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAG--CGAGACCTTCCTCCTCGTACTT 110519 ||| | | || | ||| |||| || | || | | | || | || ||| |||| Sbjct 1116049 AAACCACAACTTCTG-GGCTGGGATTGT--CTTTCGTCCCAAGCCCTGCTGCTCATACTG 1116105 Query 110520 GGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGG 110579 || ||||| ||||| || | ||| | || || ||||| | || || || Sbjct 1116106 AGTATACAAACGTTCAAACTCGTCTCCCCAAACCTCGTGCAGACCTCTACACTCATCTGG 1116165 Query 110580 ACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCA 110639 ||| | || | |||||| | ||||||| | |||||||||||||| || ||||| Sbjct 1116166 ACACATCAGTGTCCAATTCTTATTTGCCTCAACTCGTTTCATGAACAGGTCTGGGATCCA 1116225 Query 110640 CATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTC 110699 || ||| |||| | || | ||| ||||| | || ||||| | || || Sbjct 1116226 CAGCGCGTAGAATAAATCCCTTGCACGCTGGTCTTCTGCGCCGTGGTTTTTCCTGAGATC 1116285 Query 110700 CAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG 110759 || || | | ||||||| ||||| || || ||||| | || | || || ||||| Sbjct 1116286 TAACAACTTGAAAATATCCGCATGCCAAGGCTCCAGATATATCGCAAATGAGCCTTTACG 1116345 Query 110760 ---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAAT 110816 | ||| | |||| || || || || || || || | | | ||||| || | Sbjct 1116346 TTTTCCACCACCTTGGTCCACGTACTTGGCCGTCGCGTTAAATATCTTCAGCATGGGCAC 1116405 Query 110817 AATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTG 110876 || || | ||| || || || |||||||| || |||| | || | ||| Sbjct 1116406 GATCCCGTTGGAAATGCCGTTGGTGCCCCTAATGTATGATCCGCTGGCTCTGATTTTGTG 1116465 Query 110877 GATATGC-ATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTAC 110935 || ||| | || || ||||| || | ||||| || || |||| | | || Sbjct 1116466 AAT-TGCAAGTCCGATTCCACCGGCTGATTTACTTATAAAAGCGCACTGGCTCAAGGTGT 1116524 Query 110936 CATAAATACCATCAATCGAATCTGCCTTG-TTGGCAATTAGAAAGCAAGAAGACATCTGA 110994 | |||| ||| | | ||||| | |||| || ||| ||| |||||||| ||||| ||| Sbjct 1116525 TAAAAATCCCAGCCAGGGAATC-GTCTTGCATGTCAAGTAGGAAGCAAGAGGACATTTGA 1116583 Query 110995 GGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAA 111041 || | |||||||| || || | || || || || || |||| Sbjct 1116584 GGGTGCCTGGTTCCCGCGTTAAACAAAGTCGGCGTTGCGTGTGTGAA 1116630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975933740200