Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq3 145 9e-30 >seq3 Length=1317241 Score = 145 bits (160), Expect = 9e-30 Identities = 540/833 (65%), Gaps = 20/833 (2%) Strand=Plus/Plus Query 106092 CTTCCCACATATCAAATTG-AAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCA 106150 || |||| | |||||||| || | ||||||| | | || || || ||| |||| ||| Sbjct 1115502 CTCCCCAAAGGTCAAATTGTAATAAACCCTTGG-AGGCCGGTGATCCTTCATATGTTTCA 1115560 Query 106151 TAGGAACCTTG--GGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGG 106208 || | ||| | | ||| |||| ||| ||| | || |||| | ||||| | Sbjct 1115561 TAAGTACCCAGTTGCCTT--GCCAGATCAATACTCTCAGACAAACATGCATAGTACATTG 1115618 Query 106209 TTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACA 106268 ||||||| || || ||| | || || || ||||| || || | ||| || | Sbjct 1115619 TTTCAAAAATGCGTTTATTAAGTTCTCGAGCCTCGTCTGACTCGAACGGGTACCGCATTA 1115678 Query 106269 AAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAG 106328 || || ||| || || ||||| || || | ||| || ||||| |||| | ||||| Sbjct 1115679 GCATGAAGGTATCTGCTAGGCCTTGTACCCCAACACCCATCGGTCTATGTCTGAAATTAG 1115738 Query 106329 ACTTTCGCGCA-GTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTG 106387 | | || || ||| ||| || |||| |||||||| ||| || || || | Sbjct 1115739 AAACCCTGGCTTGTTTCACAGGG-TAGTAATTCCTGTCAATTACTTTATTAAGGTTATAA 1115797 Query 106388 GTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTG 106447 || | | |||||||| ||||||| |||| || || || |||| || Sbjct 1115798 GTGATTACACGGCAGATTTCATAGAGTTTTTTGAAATCGAATGTCCGTGTCTGCGTGTTA 1115857 Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 106507 ||| ||||||| || || | ||| || ||||| || || || ||| ||||| | |||| Sbjct 1115858 ACAAACTTTGGCAGCGCTACTGAAGCTAAATTACACACTGCAACCTCGTCCTTGTTTGTG 1115917 Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTC---TTAATCGTCCCCAAATTCTTTTGG 106564 | | | ||||| || | ||| ||| ||||| || |||||||||| ||| Sbjct 1115918 AATTGGACGATTTCACAGCAGAGGTT---ACTGGATTTAATAGTGCCCAAATTCTGCTGG 1115974 Query 106565 TTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 106624 |||||||| ||| || || |||||||| | |||||| || || || ||||| | || Sbjct 1115975 TTACTCTTAGCGTTACATGCGTCCTTGTATAACATGTACGGAGTGCCAGTCTCGATTTGG 1116034 Query 106625 GACTTGAGAATTGCCTTCCAC-ACATCGGCGGCTGGTACAATGGCGTTGG--CCCGTCCC 106681 |||| ||||||||| |||| || || | |||||| | || | || | || ||| Sbjct 1116035 GACTGGAGAATTGCAAACCACAACTTCTG-GGCTGG--GATTGTCTTTCGTCCCAAGCCC 1116091 Query 106682 TCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCT 106741 | | ||| |||| || || | ||||||||| || ||| | ||| |||||| Sbjct 1116092 TGCTGCTCATACTGAGTATACAAACGTTCAAACTCGTCTCCCCAAACCTCGTGCAGACCT 1116151 Query 106742 GGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAA 106801 || |||||||| | || | ||| | | ||||||| || |||||||| Sbjct 1116152 CTACACTCATCTGGACACATCAGTGTCCAATTCTTATTTGCCTCAACTCGTTTCATGAAC 1116211 Query 106802 AGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGG 106861 |||||||| |||||||| | | || | ||| || || ||||| | || ||| Sbjct 1116212 AGGTCTGGGATCCACAGCGCGTAGAATAAATCCCTTGCACGCTGGTCTTCTGCGCCGTGG 1116271 Query 106862 TTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATA 106914 || | | || | |||| | |||||||| ||||| ||||| ||||| Sbjct 1116272 TTTTTCCTGAGATCTAACAACTTGAAAATATCCGCATGCCAAGGCTCCAGATA 1116324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980733627160