Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1 131 4e-25 >seq1 Length=2540030 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||||||||| | || | || || ||| ||| || || |||||||| || || || Sbjct 1523569 TCTGAGTCTAAGCACTAAATGTAGGGTGCTCTCCTTCTGGATATTGTAGTCACTGAGTGT 1523628 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| ||||| || ||||||||||| || || || | | ||||||||||||||||| || Sbjct 1523629 TCTACCATCCTCTAGCTGCTTACCAGCAAATATCAACCTCTGTTGGTCTGGAGGAATTCC 1523688 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| || || ||||| || ||| || ||||| || ||||| | || || || || Sbjct 1523689 TTCCTTATCCTGAATCTTAGCCTTAACATTCTCTATCGTGTCGCTAGGCTCAACCTCGAG 1523748 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | || |||||||| |||||||| ||||| | ||||| Sbjct 1523749 GGTTATAGTTTTTCCTGTTAAAGTTTTGACGAATATCTGCAT 1523790 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 194950 TCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAG 195009 || ||||| || ||||| || | ||| || ||||| || | ||||||||| || || Sbjct 2214265 TCCTTTTGGATGTTGTAGTCACTCAAAGTCCTACCATCCTCTAACTGCTTACCAGCAAAT 2214324 Query 195010 ATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTC 195069 || | | |||||||||||||| |||||||| || |||||||| || ||| || ||| Sbjct 2214325 ATCAACCTCTGTTGGTCTGGAGGGATGCCTTCCTTATCTTGAATCTTAGCCTTAACATTC 2214384 Query 195070 TCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACG 195129 || || ||||| | || || || ||||| | || |||||||| |||||||| ||| Sbjct 2214385 TCTATCGTGTCGCTAGGCTCAACCTCGAGGGTTATAGTTTTTCCTGTTAAAGTTTTGACG 2214444 Query 195130 AACACTTGCAT 195140 || | |||||| Sbjct 2214445 AATATTTGCAT 2214455 Score = 116 bits (128), Expect = 8e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| |||||||| | |||||| ||| || || || || ||||| || | ||| Sbjct 1523341 TCTGAGCCTCAAAACCAAGTGAAGCGTGCTTTCCTTCTGGATGTTGTAGTCACTCAAAGT 1523400 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 || ||||| || | ||||||||| || || || | | ||||||||||||||||| || Sbjct 1523401 CCTACCATCCTCTAACTGCTTACCAGCAAATATCAACCTCTGTTGGTCTGGAGGAATTCC 1523460 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| || || ||||| || ||| || ||||| || ||||| | || || || || Sbjct 1523461 TTCCTTATCCTGAATCTTAGCCTTAACATTCTCTATCGTGTCGCTAGGCTCAACCTCGAG 1523520 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | ||||| || || | ||||| || || | |||||| Sbjct 1523521 GGTTATAGTCTTGCCAGTGAGGGTTTTAACAAAAATTTGCAT 1523562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481472062903