Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1 109 4e-19 >seq1 Length=2540030 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC-CGA 34813 ||||| || | ||||||||||||||||| |||||||| ||||| ||||| ||||| | Sbjct 1523336 CCTCCTCTGAGCCTCAAAACCAAGTGAAGCGTGCTTTCCTTCTGGATGTTGTAGTCACTC 1523395 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 || | | | |||| || | ||| || || |||||||| | | || |||||| | || Sbjct 1523396 AAAG-TCCTACCATCCTCTAACTGCTTACCAGCAAATATCAACCTCTGTTGGTCTGGAGG 1523454 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAAC 34933 | || ||||| || |||||| || || |||||| || | | |||||| Sbjct 1523455 AATTCCTTCCTTATCCTGAATCTTAGCCTTAACATTCTCTATCGTGTCGCTAGGCTCAAC 1523514 Query 34934 ATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||| |||||| || || || ||||| || || ||||| || |||||| Sbjct 1523515 CTCGAGGGTTATAGTCTTGCCAGTGAGGGTTTTAACAAAAATTTGCATA 1523563 Score = 86.0 bits (94), Expect = 4e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| || ||||| || || ||||| || ||| |||| || ||||| || || Sbjct 1523594 GTGCTCTCCTTCTGGATATTGTAGTCACTGAGTGTTCTACCATCCTCTAGCTGCTTACCA 1523653 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 |||||||| | | || |||||| | || | || ||||| || |||||| || Sbjct 1523654 GCAAATATCAACCTCTGTTGGTCTGGAGGAATTCCTTCCTTATCCTGAATCTTAGCCTTA 1523713 Query 34905 ACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 || |||||| || | | |||||| |||| |||||| |||||||| || | ||| Sbjct 1523714 ACATTCTCTATCGTGTCGCTAGGCTCAACCTCGAGGGTTATAGTTTTTCCTGTTAAAGTT 1523773 Query 34965 TTCACAAAGATCTGCATATT 34984 || || || ||||||||||| Sbjct 1523774 TTGACGAATATCTGCATATT 1523793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633564391752