Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1 87.8 1e-11 >seq1 Length=2540030 Score = 87.8 bits (96), Expect = 1e-11 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 563263 AGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTTCTTGAAT 563320 ||||| | ||||||||||||||| ||||| || ||||| ||| | ||| || || Sbjct 2214244 AGTACTAAATGAAGGGTACTTTCCTTTTGG--ATGTTGTAGTCACTCAAAGTCCTACCAT 2214301 Query 563321 CTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTAT 563380 | || | || || || ||||| || | || || || || ||||| || ||||| |||| Sbjct 2214302 CCTCTAACTGCTTACCAGCAAATATCAACCTCTGTTGGTCTGGAGGGATGCCTTCCTTAT 2214361 Query 563381 CTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAG 563440 ||||||| || || || ||| || || || | | | ||||| || | || Sbjct 2214362 CTTGAATCTTAGCCTTAACATTCTCTATCGTGTCGCTAGGCTCAACCTCGAGGGTTATAG 2214421 Query 563441 TTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 |||| || || | |||||| ||||| |||||||| Sbjct 2214422 TTTTTCCTGTTAAAGTTTTGACGAATATTTGCAT 2214455 Score = 86.0 bits (94), Expect = 5e-11 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||||| | || || | ||| ||||| || || || |||||||| ||| || ||| Sbjct 1523570 CTGAGTCTAAGCACTAAATGTAGGGTGCTCTCCTTCTGGATATTGTAGTCACTGAGTGTT 1523629 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 || ||| || || || || || ||||| || | || || || || |||||||||||| Sbjct 1523630 CTACCATCCTCTAGCTGCTTACCAGCAAATATCAACCTCTGTTGGTCTGGAGGAATTCCT 1523689 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGA 563433 || ||||| ||||| || || || ||| || || || | | | ||||| Sbjct 1523690 TCCTTATCCTGAATCTTAGCCTTAACATTCTCTATCGTGTCGCTAGGCTCAACCTCGAGG 1523749 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || | |||||| || || | |||||| ||||| || |||||| Sbjct 1523750 GTTATAGTTTTTCCTGTTAAAGTTTTGACGAATATCTGCATA 1523791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029295524039410