Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1 86.0 5e-12 >seq1 Length=2540030 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || |||| ||| ||||| || |||||||| || || || || ||||| ||| Sbjct 1523336 CCTCCTCTGAGCCTCAAAACCAAGTGAAGCGTGCTTTCCTTCTGGATGTTGTAGTCACTC 1523395 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | | | | | || || ||||||||||| |||||||||| | |||||| || | ||| Sbjct 1523396 AAAGTCCTACCATCCTCTAACTGCTTACCAGCAAATATCAACCTCTGTTGGTCTGGAGGA 1523455 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || |||||| || ||| | | | || | ||| ||| Sbjct 1523456 ATTCCTTCCTTATCCTGAATCTTAGCCTTAACATTCTCTATCGTGTCGCTAGGCTCAACC 1523515 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || || || || || | ||||| |||||||| ||||| Sbjct 1523516 TCGAGGGTTATAGTCTTGCCAGTGAGGGTTTTAACAAAAATTTGCAT 1523562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937558215907