Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3 86.0 1e-11 >seq3 Length=1317241 Score = 86.0 bits (94), Expect = 1e-11 Identities = 195/293 (67%), Gaps = 3/293 (1%) Strand=Plus/Plus Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872 |||| | |||||||||||| |||| |||||||||| ||| | ||||| | | | Sbjct 1116197 ACTCGTTTCATGAACAGGTCTGGGATCCACAGCGCGTAGAATAAATCCCTTGCACGCTGG 1116256 Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932 || || | || |||||| | ||||||| || | || || ||||| ||||| ||| Sbjct 1116257 TCTTCTGCGCCGTGGTTTTTCCTGAGATCTAACAACTTGAAAATATCCGCATGCCAAGGC 1116316 Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCTT---GCCGCCCTGGTCCACCAGCCTGGCC 213989 |||| || || ||||| | ||| | || || || |||||||| | ||||| Sbjct 1116317 TCCAGATATATCGCAAATGAGCCTTTACGTTTTCCACCACCTTGGTCCACGTACTTGGCC 1116376 Query 213990 ACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCT 214049 | ||| || || ||| | ||| || | ||||||||| |||||||| ||| Sbjct 1116377 GTCGCGTTAAATATCTTCAGCATGGGCACGATCCCGTTGGAAATGCCGTTGGTGCCCCTA 1116436 Query 214050 ATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGC 214102 || || || ||| ||| || | ||| || | || || || |||||||| Sbjct 1116437 ATGTATGATCCGCTGGCTCTGATTTTGTGAATTGCAAGTCCGATTCCACCGGC 1116489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532695202560