Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3 163 3e-35 >seq3 Length=1317241 Score = 163 bits (180), Expect = 3e-35 Identities = 794/1243 (64%), Gaps = 35/1243 (3%) Strand=Plus/Minus Query 75704 CTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTC 75763 |||||||| |||||||| |||||||| || ||||||| | | ||| | || | Sbjct 1116228 CTGTGGATCCCAGACCTGTTCATGAAACGAGTTGAGGCAAATAAGAATTGGACACTGATG 1116169 Query 75764 TGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTAC 75823 |||||||| || |||||| ||| | ||| || ||||||||| | || Sbjct 1116168 TGTCCAGATGAGTGTAGAGGTCTGCACGAGGTTTGGGGAGACGAGTTTGAACGTTTGTAT 1116109 Query 75824 ACAAAGTATGAAGAGGAGGG-TAGAGCCAATGCGACTGTACCAGCCGCCGATGTT-TGGA 75881 || ||||||| || |||| | | | | | ||| | |||||| | || ||| ||| Sbjct 1116108 ACTCAGTATGAGCAGCAGGGCTTGGGACGAAA-GACAATCCCAGCC-CAGAAGTTGTGGT 1116051 Query 75882 AGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTT 75941 || |||||| | || || | |||||||| || || || ||| | |||||||| || | Sbjct 1116050 TTGCAATTCTCCAGTCCCAAATCGAGACTGGCACTCCGTACATGTTATACAAGGACGCAT 1115991 Query 75942 GTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGG 76001 ||||| ||||||||||| |||||||||| || || || | || || ||| | Sbjct 1115990 GTAACGCTAAGAGTAACCAGCAGAATTTGGGCACTATTAAATCCAGTAACCTCTGCTGTG 1115931 Query 76002 AAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCC 76061 |||| | | | |||| | ||||| ||| || || || ||||| || ||| | || | Sbjct 1115930 AAATCGTCCAATTCACAAACAAGGACGAGGTTGCAGTGTGTAATTTAGCTTCAGTAGCGC 1115871 Query 76062 TTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCA 76121 | ||||||| ||| || |||| || || || |||| ||||||| |||||||| Sbjct 1115870 TGCCAAAGTTTGTTAACACGCAGACACGGACATTCGATTTCAAAAAACTCTATGAAATCT 1115811 Query 76122 CAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGA 76181 | | || | || || || ||| |||||||| |||| || ||| ||| | Sbjct 1115810 GCCGTGTAATCACTTATAACCTTAATAAAGTAATTGACAGGAATTACTA-CCCTGTGAAA 1115752 Query 76182 C-TGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCG 76240 | || | |||||| | |||| ||||| || ||| | || || ||||| || || Sbjct 1115751 CAAGCCAGGGTTTCTAATTTCAGACATAGACCGATGGGTGTTGGGGTACAAGGCCTAGCA 1115692 Query 76241 GATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCT 76300 ||| || || | || ||| | || || ||||| || || || | ||| Sbjct 1115691 GATACCTTCATGCTAATGCGGTACCCGTTCGAGTCAGACGAGGCTCGAGAACTTAATAAA 1115632 Query 76301 CGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCC 76360 || || |||||||| ||||| | |||| || | |||| ||| |||| ||| | Sbjct 1115631 CGCATTTTTGAAACAATGTACTATGCATGTTTGTCTGAGAGTATTGATCTGGC--AAGGC 1115574 Query 76361 --CAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTT-CAGTTT 76417 | ||| | ||||| |||| ||| || || || || | ||||||| | || || ||| Sbjct 1115573 AACTGGGTACTTATGAAACATATGAAGGATCACCGGCCT-CCAAGGGTTTATTACAATTT 1115515 Query 76418 GATATGTGGG-----AAGGT-GAAACCAAGCTCAACTACGACTGGGATGTTCTCAAGGAA 76471 || | |||| ||||| || | ||| || ||||||||| || || | Sbjct 1115514 GACCTTTGGGGAGCTAAGGTGGATAATTCGCT---CTGGGACTGGGATAAACTTAA--AG 1115460 Query 76472 CGCATCAAGGAGA--AGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCT 76529 | ||| | || | || || | || | || || ||||||||||| || || Sbjct 1115459 CTGATCTCCGTGAACATGGGCTAAGAAATTCCTTATTCATTGCACCAATGCCCACGGCTA 1115400 Query 76530 CCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACC 76589 || | || || | || || ||||||| |||||||| ||||| | || || ||| Sbjct 1115399 GTACTTCTCAGATTCTTGGCAACAATGAATCGTTTGAACCTTACACTAGTAATATTTACT 1115340 Query 76590 TGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCA 76649 |||||| | ||||||||| || | || || || || | |||||| | | Sbjct 1115339 ACAGAAGAGTGTTGAGTGGTGAGTTTTTCGTGGTAAATCCTCATCTGCTGAATGACTTGA 1115280 Query 76650 AGAAGATTGGTCTCTGGTCCAAGGATATGA---AGGATCTCAT-GGTGAAAGCGGGTGGT 76705 || | || |||||| | || |||| || | || || | | | ||||| Sbjct 1115279 TTGAGCTAGGGCTCTGGAACGAGACAATGAAACAGAAGCTAATCGCCTACAACGGGT--- 1115223 Query 76706 TCCATTCAA-AATATCTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTG 76764 || | || | || || |||||| | |||| ||| || | || ||||| || Sbjct 1115222 --CACTAAAGCACATTGACGAGATCCCACAGCATATTAAGGATTTGTATAAAACAGTTTG 1115165 Query 76765 GGAAATCAAGATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCA 76824 ||| || ||| |||| | | || |||||||| ||||||||||| |||||||| || Sbjct 1115164 GGAGATTAAGCAGAAACACATAATCGACATGGCGGCAGATCGTGGCATTTTCATTGACCA 1115105 Query 76825 AAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCA 76884 |||| | || | ||||||| || || | |||||| | |||||| Sbjct 1115104 GTCTCAATCACTCAACATTCACATGGAACAGCCGACATTCAGTAAGCTCACGAGTATGCA 1115045 Query 76885 TATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTAT 76927 | || | |||||| |||| | ||||| ||| | |||||| Sbjct 1115044 CTTTTATGGCTGGAAAAAGGGTTTGAAAACGGGAGTTTACTAT 1115002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569532885920