Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq2 288 1e-72 seq1 140 4e-28 >seq2 Length=1971884 Score = 288 bits (318), Expect = 1e-72 Identities = 1036/1595 (65%), Gaps = 29/1595 (2%) Strand=Plus/Plus Query 195298 AGCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCG 195357 ||| ||||| || || || || || || ||||| ||||| | |||| | | || Sbjct 300623 AGCAATTGGAATTGACTTGGGTACCACATACTCCTGTGTGGCGGTATACAAGGACAATAA 300682 Query 195358 TGTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTAC 195417 ||||| || ||||| |||||||| |||||| | ||||| || || ||||| || || || Sbjct 300683 CGTAGAAATCATCCCAAATGACCAGGGAAACAGGACAACGCCGTCCTACGTCGCATTCAC 300742 Query 195418 AGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAA 195477 || | ||| | | | || || || |||||||| || ||| ||||| || Sbjct 300743 TGACACCGAAAGATTAATCGGTGACGCAGCAAAAAACCAAGAAGCCCGTAACCCAGAAAA 300802 Query 195478 TACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGA 195537 || | || ||||| ||| | || ||||| | |||||| || | | |||||| || Sbjct 300803 CACAATTTTCGACGCCAAGAGGCTCATTGGCAGGAAGTTTGACGACAGAACAGTCCAGGA 300862 Query 195538 CGATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAA 195597 || || ||| ||||| | | ||||| ||| | ||||| | ||| | Sbjct 300863 GGACATGAAGCACTGGCCATTCAAAGTTACCAACGGACCAAACGGAAAGCCGAACATTGA 300922 Query 195598 TGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCC-GAAGAAATTTCGTCTATGGTGT 195656 || || || ||||| ||||| | || | | | || || || || || ||||| Sbjct 300923 AGTGACCTTCCAAGGTGAAAAGAAG-ACCTTCCACGCAGAGGAGATATCCTCCATGGTCC 300981 Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTG 195716 | | ||||||||||| | || ||| | || |||| || | || || || | || Sbjct 300982 TTACCAAGATGAAGGAAATAGCCGAAGCCTTTTTGGGAAAGAGCGTCAAGGACGTCGTCA 301041 Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTA 195776 | || || || || ||||||| || || ||| |||| || || |||||||| | | | Sbjct 301042 TCACCGTTCCAGCCTACTTCAACGACTCTCAAAGACAAGCAACCAAGGACGCCGGAACCA 301101 Query 195777 TTGCGGGTCTAAACTGTCTT-AGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTAT 195835 | || || || || |||| | || || ||||| || ||||| || || || || || || Sbjct 301102 TAGCCGGACTCAA-TGTCATGAGGATCATCAACGAGCCAACTGCAGCAGCCATAGCCTAC 301160 Query 195836 GGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGT 195895 ||| | || ||||| | || || || || || || || || ||| | ||||||||| Sbjct 301161 GGTTTAGATAAGAAGGGCGGCGGTGAGAAGAACGTTTTAATATTCGATTTGGGTGGTGGT 301220 Query 195896 ACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCT 195955 || || ||||| | | | || |||| |||||| |||||||| ||||| || || Sbjct 301221 ACCTTCGATGTTAGCATATTGACCATAGAAGATGGTATCTTCGAAGTCAAGGCCACAGCA 301280 Query 195956 GGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGT-CATT-TGTCTG 196013 ||||||||||| | ||||| ||||| || || || |||| || || | |||| | Sbjct 301281 GGTGATACTCACTTGGGTGGAGAAGACTTTGACA-ACCTCTTGGTCGAGCACTGTGTCCG 301339 Query 196014 ATGAGTTCCGTCGAAAGAATAA--GAAAGAT-ATTTCTGGAAATCCTAGGGCTCTTCGTC 196070 || ||| || ||| || |||||| || || ||| || ||||| | Sbjct 301340 C-GACTTCATGCGCTTGAACAATGGAAAGAACATCTCATCAAACAAGAGAGCTCTAAGGA 301398 Query 196071 GGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGG 196130 | || ||||| ||||||||||| || || ||||| | | || | | Sbjct 301399 GACTAAGGACCCACTGTGAACGTGCAAAGAGAGTACTCTCAAGCTCAACCCAGGCCACCA 301458 Query 196131 TTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTT 196190 |||| | || || | | || || ||||||| | | || || |||| | | ||| | | Sbjct 301459 TTGAACTCGACTCTCTATACGAGGGCATTGACTACAACACCACCATTAGCAGGGCAAGGT 301518 Query 196191 TTGAAGAGTTA---AACTCTGATTTGTTTAGGAAGTGTA-TGGAACCTGTTGAACAAGTA 196246 | || ||| | ||| || ||| || ||| | ||| || ||||| | | | Sbjct 301519 TCGAGGAGCTCTGTAAC---GAGAAGTTCAG-AAGCACACTGGTTCCAGTTGAGAAGGCA 301574 Query 196247 CTTCGTGACGCAAAGA-TGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATC 196305 ||| | | | | || | || ||| | | | ||| | || | || || ||| Sbjct 301575 CTT-GAGTCCTCAGGACTTGACAAGAGAAGCATCCACGAAGTCGTGTTAGTCGGTGGAAG 301633 Query 196306 AACCCGTATTCCGAAGATTCAACAGATGCTT-TCTAG--CTTCTTCAATAATAAAGATTT 196362 ||| | ||||| ||||| ||| | || || || ||||||||| || || Sbjct 301634 TACCAGAATTCCCAAGATCCAA---ACCCTCATCAAGAACTTCTTCAACGGAAAGGAGCC 301690 Query 196363 AAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTAT 196422 | || | |||||||| || ||||||||||| || ||||| || || || || || || Sbjct 301691 ATGCAGGTCAATCAACCCAGACGAAGCAGTTGCCTACGGTGCAGCAGTCCAAGCCGCCAT 301750 Query 196423 TCTCTCAGGTGTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGT 196482 | || || | | | || |||| || | || || | ||||| || || | Sbjct 301751 CTTGTCTGGAAACCAGTCTGAGAAGATCCAGGAATTGCTCCTGTTGGATGTCGCTCCATT 301810 Query 196483 ATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAAC 196542 || || ||| | ||||| || ||||||||||||||| | || | || |||||||| Sbjct 301811 GTCGCTTGGTTTGGAAACCGCAGGTGGTGTTATGACTGTCTTGATCAAGAGAAACACAAC 301870 Query 196543 TATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCA 196602 || || || |||||| | ||| |||| |||| | |||| ||| ||||||| Sbjct 301871 CATCCCAACCAAGAAGAACCAAATCTTCACAACCAACGAGGATAGGCAAGAAGGTGTTTT 301930 Query 196603 TATTCAAGTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTT 196661 ||||| || | |||||| ||||| | | || | ||||| ||| | | || |||| | Sbjct 301931 GATTCAGGTGTTTGAAGGTGAACG-TGCAATGACCAAGGACAACAACTTGCTCGGAAAGT 301989 Query 196662 TCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCG 196721 || | | || || || | | || || ||||||||||| || ||| | || ||||| Sbjct 301990 TCCACCTAACAGGAATCGCTCCCGCTCCAAGAGGTGTTCCTCAAATTGAAGTCACCTTCG 302049 Query 196722 ATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTG 196781 | || ||||||||||| || | |||||||| || ||||||| | |||| || || | Sbjct 302050 ACATTGACGCAAATGGTATCTTGAACGTCACCGCCATGGACAAGTCGACTGGAAAGTCGG 302109 Query 196782 AAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGG 196841 || | | || ||||| |||||||| || | |||| |||||||| | |||| Sbjct 302110 AACACGTCACCATCACCAACGACAAGGGCCGCTTGAGCCAGGAAGAAATTGACAGAATGG 302169 Query 196842 TTCAAGATGCGGAAAAGTACAGGGAAGAAGACGAG 196876 || | || || || ||||||| ||| || |||||| Sbjct 302170 TTGAGGAGGCTGAGAAGTACAAGGAGGAGGACGAG 302204 Score = 93.3 bits (102), Expect = 6e-14 Identities = 219/327 (67%), Gaps = 8/327 (2%) Strand=Plus/Minus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 |||||||||||||| ||||| || | | |||||| ||| || | | || ||| | || Sbjct 1507065 AAGATGAAGGAGACCGCGGAGTCGTACTTGGGTAGAACAGTTTCAAAAGCTGTTATCACA 1507006 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGC- 195780 || || || || |||| || || || |||| || ||||| ||||| | | ||||| Sbjct 1507005 GTTCCAGCGTATTTCAACGACTCTCAGAGACAAGCTACAAAAGACGCCGGTAAGATTGCA 1506946 Query 195781 GGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCT 195840 || | || | | | | || || || || || ||||| ||||| | || | ||| | Sbjct 1506945 GGCTTGGAAGTAT-TGCGTATAATTAACGAGCCCACAGCTGCTGCGCTGGCCTTTGGAAT 1506887 Query 195841 GGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTT 195900 ||| ||| || |||| | | | || || | || | || | || ||||||||||| Sbjct 1506886 GGATAAG---AATGACGGAAAGACAATTGCAGTG---TACGACTTGGGAGGTGGTACGTT 1506833 Query 195901 TGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGA 195960 |||||| || | | ||| || ||| | || ||||| ||||| || ||| | Sbjct 1506832 TGATGTGAGTATTTTGGAGATTTTGGGCGGTGTGTTTGAAGTTAAGGCCACAAACGGTAA 1506773 Query 195961 TACTCATCTAGGTGGTGAAGATTTCGA 195987 ||| |||||||||||||| || || Sbjct 1506772 CACTTCACTAGGTGGTGAAGACTTTGA 1506746 >seq1 Length=2540030 Score = 140 bits (154), Expect = 4e-28 Identities = 163/220 (74%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 |||||||||| ||||| |||||||| ||||| || ||||| ||||||||||||||| | Sbjct 1523564 GTATGCAAATTTTTGTTAAAACCCTCACTGGCAAGACTATAACCCTCGAGGTTGAGCCTA 1523505 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 ||||| || || || | || || |||||||| ||||||||||| ||||| || || | Sbjct 1523504 GCGACACGATAGAGAATGTTAAGGCTAAGATTCAGGATAAGGAAGGAATTCCTCCAGACC 1523445 Query 171980 AGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACA 172039 | || | | || ||||||||||| ||| | || ||||| | || | ||| |||| Sbjct 1523444 AACAGAGGTTGATATTTGCTGGTAAGCAGTTAGAGGATGGTAGGACTTTGAGTGACTACA 1523385 Query 172040 ACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCT 172079 || | || ||||| || || ||| | ||| | ||||| Sbjct 1523384 ACATCCAGAAGGAAAGCACGCTTCACTTGGTTTTGAGGCT 1523345 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || ||||| | || ||||||||||| ||||||||||||||| | Sbjct 2214455 ATGCAAATATTCGTCAAAACTTTAACAGGAAAAACTATAACCCTCGAGGTTGAGCCTAGC 2214396 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | || || ||||||||||||||||||||||| || || || || Sbjct 2214395 GACACGATAGAGAATGTTAAGGCTAAGATTCAAGATAAGGAAGGCATCCCTCCAGACCAA 2214336 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || | | || ||||||||||| ||| | || ||||| | || | ||| |||||| Sbjct 2214335 CAGAGGTTGATATTTGCTGGTAAGCAGTTAGAGGATGGTAGGACTTTGAGTGACTACAAC 2214276 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | |||||||| ||| || || | || || ||| | || ||||| Sbjct 2214275 ATCCAAAAGGAAAGTACCCTTCATTTAGTACTGAGGTTGCGTGGTGG 2214229 Score = 134 bits (148), Expect = 2e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 171861 TATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTC 171920 |||||| || || || ||||| | || ||||||||||| ||||||||||||||| | Sbjct 1523791 TATGCAGATATTCGTCAAAACTTTAACAGGAAAAACTATAACCCTCGAGGTTGAGCCTAG 1523732 Query 171921 AGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCA 171980 ||||| || || || | || || |||||||| ||||||||||| ||||| || || || Sbjct 1523731 CGACACGATAGAGAATGTTAAGGCTAAGATTCAGGATAAGGAAGGAATTCCTCCAGACCA 1523672 Query 171981 GCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAA 172040 || | | || ||||||||||| ||||| || ||||| | || ||| ||| ||||| Sbjct 1523671 ACAGAGGTTGATATTTGCTGGTAAGCAGCTAGAGGATGGTAGAACACTCAGTGACTACAA 1523612 Query 172041 CGTTCAAAAGGAGTCTACTCTACA 172064 | || |||||| || ||||| Sbjct 1523611 TATCCAGAAGGAGAGCACCCTACA 1523588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657862325990480