Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1 105 1e-17 >seq1 Length=2540030 Score = 105 bits (116), Expect = 1e-17 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| || | | |||||||||| || ||| || |||||| || ||| Sbjct 1523561 ATACCTCCTCTGAGTCTAAGCACTAAATGTAGGGTGCTCTCCTTCTGGATATTGTAGTCA 1523620 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | ||||| |||| || | || ||||||||||| || || |||||||| || || Sbjct 1523621 CTGAGTGTTCTACCATCCTCTAGCTGCTTACCAGCAAATATCAACCTCTGTTGGTCTGGA 1523680 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| ||||| || || ||| || ||||| ||| | || | || Sbjct 1523681 GGAATTCCTTCCTTATCCTGAATCTTAGCCTTAACATTCTCTATCGTGTCGCTAGGCTCA 1523740 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || || || ||||| || ||||| ||||| | ||||||||||| || Sbjct 1523741 ACCTCGAGGGTTATAGTTTTTCCTGTTAAAGTTTTGACGAATATCTGCATATT 1523793 Score = 87.8 bits (96), Expect = 4e-12 Identities = 164/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| ||| || ||||| | | | | ||||||||| | ||| || || ||| | Sbjct 2214218 GTTCAATGATTCCACCACGCAACCTCAGTACTAAATGAAGGGTACTTTCCTTTTGGATGT 2214277 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 | || ||| || || | |||| || || || ||||||||||| || || ||||||| Sbjct 2214278 TGTAGTCACTCAAAGTCCTACCATCCTCTAACTGCTTACCAGCAAATATCAACCTCTGTT 2214337 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 | || || || || ||||| |||||||| || ||| || ||||| ||| | || Sbjct 2214338 GGTCTGGAGGGATGCCTTCCTTATCTTGAATCTTAGCCTTAACATTCTCTATCGTGTCGC 2214397 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538 | || || || || || || ||||| || ||||| ||||| | ||||| ||||| | Sbjct 2214398 TAGGCTCAACCTCGAGGGTTATAGTTTTTCCTGTTAAAGTTTTGACGAATATTTGCATCT 2214457 Query 192539 T 192539 | Sbjct 2214458 T 2214458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479886477150