Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq1 105 5e-18 >seq1 Length=2540030 Score = 105 bits (116), Expect = 5e-18 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGC 29618 ||||| || | | || ||||| ||||||||| ||| || || ||||| || || | | Sbjct 1523336 CCTCCTCTGAGCCTCAAAACCAAGTGAAGCGTGCTTTCCTTCTGGATGTTGTAGTCACTC 1523395 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || | | | | ||| || | || || |||||| ||||||| || || || || || || Sbjct 1523396 AAAG-TCCTACCATCCTCTAACTGCTTACCAGCAAATATCAACCTCTGTTGGTCTGGAGG 1523454 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||| || || || || || ||| || | || ||| | |||| ||||| | | || | Sbjct 1523455 AATTCCTTCCTTATCCTG-AATCTTAGCCTTAACATTCTCTATCGTGTCGCTAGGCTCAA 1523513 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || |||||||| |||||||| | |||||||||||| || ||||| Sbjct 1523514 CCTCGAGGGTTATAGTCTTGCCAGTGAGGGTTTTAACAAAAATTTGCAT 1523562 Score = 104 bits (114), Expect = 2e-17 Identities = 166/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CG 29617 ||| || | ||| | ||| || |||||||| || ||| ||||| ||||| || || | Sbjct 2214228 TCCACCACGCAACCTCAGTACTAAATGAAGGGTACTTTCCTTTTGGATGTTGTAGTCACT 2214287 Query 29618 CAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCG 29677 ||| | | | | ||| || | || || |||||| ||||||| || || || || || | Sbjct 2214288 CAAAG-TCCTACCATCCTCTAACTGCTTACCAGCAAATATCAACCTCTGTTGGTCTGGAG 2214346 Query 29678 GAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCT 29736 | || || || || ||||| ||| || | || ||| | |||| ||||| | | || Sbjct 2214347 GGATGCCTTCCTTATCTTG-AATCTTAGCCTTAACATTCTCTATCGTGTCGCTAGGCTCA 2214405 Query 29737 ACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || ||||||||||| || ||||| ||||| || ||||| ||||| || Sbjct 2214406 ACCTCGAGGGTTATAGTTTTTCCTGTTAAAGTTTTGACGAATATTTGCATCTT 2214458 Score = 95.1 bits (104), Expect = 9e-15 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 ||||| ||||| || ||| || || || || || || || | || | | ||| Sbjct 1523579 AGCACTAAATGTAGGGTGCTCTCCTTCTGGATATTGTAGTCACTGAGTGTTCTACCATCC 1523638 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || || || || |||||| ||||||| || || || || || ||||| || || || || Sbjct 1523639 TCTAGCTGCTTACCAGCAAATATCAACCTCTGTTGGTCTGGAGGAATTCCTTCCTTATCC 1523698 Query 29695 TGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| || | || ||| | |||| ||||| | | || || || || |||||||| Sbjct 1523699 TG-AATCTTAGCCTTAACATTCTCTATCGTGTCGCTAGGCTCAACCTCGAGGGTTATAGT 1523757 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||| || ||||| ||||| || ||||||||||| || Sbjct 1523758 TTTTCCTGTTAAAGTTTTGACGAATATCTGCATATT 1523793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385219157746269