Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq2 168 5e-36 >seq2 Length=1971884 Score = 168 bits (186), Expect = 5e-36 Identities = 904/1420 (64%), Gaps = 36/1420 (3%) Strand=Plus/Minus Query 281425 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 281484 ||| || || || | |||||||| || || | || || ||||||||||||||||| || Sbjct 302084 GGCGGTGACGTTCAAGATACCATTTGCGTCAATGTCGAAGGTGACTTCAATTTGAGGAAC 302025 Query 281485 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 281544 ||||| |||| || | ||| ||| | | || |||| || || || || || Sbjct 302024 ACCTCTTGGAGCGGGAGCGATTCCTGTTAGGTGGAACTTTCCGAGCAAGTTGTTGTCCTT 301965 Query 281545 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 281604 || | | |||||||| || || | || || ||| | ||| |||| | Sbjct 301964 GGTCATTGCACGTTCACCTTCAAACACCTGAATCAAAACACCTTCTTGCCTATCCTCGTT 301905 Query 281605 AGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGG 281663 ||||| || | | ||| | || || || || ||||||||||| | || | | Sbjct 301904 GGTTGTGAAGATT-TGGTTCTTCTTGGTTGGGATGGTTGTGTTTCTCTTGATCAAGACAG 301846 Query 281664 TCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGA-CA 281722 |||||| |||||| || ||||| |||||||| || | |||| |||||| | |||| || Sbjct 301845 TCATAACACCACCTGCGGTTTCCAAACCAAGCGACAATGGAGCGACATCCAACAGGAGCA 301786 Query 281723 ATATTTTGAAGTTTTTCAT-CAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACC 281781 || | || | || ||| | | || | |||||| | || ||||| | || ||||| Sbjct 301785 AT-TCCTGGATCTTCTCAGACTGGTTTCCAGACAAGA-TGGCGGCTTGGACTGCTGCACC 301728 Query 281782 ATATGCAACAGCTTCATCAGGATTAACAGT--TTCATTTAGTTTTTTACCATTGAAAAAA 281839 || ||||| ||||| || || || | | | ||| | | || || ||||| || Sbjct 301727 GTAGGCAACTGCTTCGTCTGGGTTGATTGACCTGCATG--GCTCCTTTCCGTTGAAGAAG 301670 Query 281840 TT-TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTC 281898 || | | || | | | | ||| ||||| | | ||| || ||||| || | ||| Sbjct 301669 TTCTTGATGAGGGTTTGG-ATCTTGGGAATTCTGGTACTTCCACCGACTAACACGACTTC 301611 Query 281899 ATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACC 281958 || | | || || ||| ||| | | | || ||||| || | || Sbjct 301610 GTGGATGCTTCTCTTGTCAAGTCCTGAGGACTCAAGTGCCTTCTCAACTGGAACCAGTGT 301551 Query 281959 AGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATA 282018 ||| ||| || ||| || || ||||| | || || ||| ||| || || Sbjct 301550 GCTTCTGAACTTCTCGTTACAGAGCTCCTCGAACCTTGCCCTGCTAATGGTGGTGTTGTA 301491 Query 282019 ATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGC 282078 ||||| || ||| | | ||| || | |||||| || | || || || || ||| | Sbjct 301490 GTCAATGCCCTCGTATAGAGAGTCGAGTTCAATGGTGGCCTGGGTTGAGCTTGAGAGTAC 301431 Query 282079 ACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAA 282138 | || ||||||||||| ||||||||||| | || ||| | || ||||| | Sbjct 301430 TCTCTTTGCACGTTCACAGTGGGTCCTTAGTCTCCTTAGAGCTCTCT-TGTTTGATG-AG 301373 Query 282139 ATCTGTTTTATATTTT-----CTCTTGAAATCTTCAACACACCATGTTA---CAAGACGA 282190 || | ||| ||| | | | |||| || ||||| || | ||||| | Sbjct 301372 ATGTTCTTTCCATTGTTCAAGCGCATGAAGTCGCGGACACAG--TGCTCGACCAAGAGG- 301316 Query 282191 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 282250 || ||||| ||||| || ||||| | ||||| |||| || || | |||| ||| | Sbjct 301315 TTGTCAAAGTCTTCTCCACCCAAGTGAGTATCACCTGCTGTGGCCTTGACTTCGAAGATA 301256 Query 282251 CCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGT 282310 |||||||| | | ||| | ||||||| ||| |||||||||| ||| || || | Sbjct 301255 CCATCTTCTATGGTCAATATGCTAACATCGAAGGTACCACCACCCAAATCGAATATTAAA 301196 Query 282311 ACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 282370 || ||| | || | | || ||||| | ||| || || | || || |||||||| Sbjct 301195 ACGTTCTTCTCACCGCCGCCCTTCTTATCTAAACCGTAGGCTATGGCTGCTGCAGTTGGC 301136 Query 282371 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 282430 || || || || |||| ||||| || || || || |||| || || || || |||||| Sbjct 301135 TCGTTGATGATCCTCATGACATTGAGTCCGGCTATGGTTCCGGCGTCCTTGGTTGCTTGT 301076 Query 282431 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTAC-TTCTTTTCC 282489 ||||| || ||||| || || || ||||| || || ||| | || | || ||||| || Sbjct 301075 CTTTGAGAGTCGTTGAAGTAGGCTGGAACGGTGATGACGACGTCCTTGACGCTCTTTCCC 301016 Query 282490 AATATAAGCGCTT--GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 282547 || || |||| ||| ||| ||||| || | | | ||| || || || | ||| Sbjct 301015 AA---AAAGGCTTCGGCTATTTCCTTCATCTTGGTAAGGACCATGGAGGATATCTCCTCT 300959 Query 282548 G-GAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTT---ATTACC 282603 | | | | | ||| |||| ||| | | ||||||| | || || || Sbjct 300958 GCGTGGA-AGGTCTTCTTTTCACCTTGGAAGGTCACTTCAATGTTCGGCTTTCCGTTTGG 300900 Query 282604 AACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAA 282663 | || ||||||| |||||||| | ||||| || || || || ||| | ||| Sbjct 300899 TCCGTTGGTAACTTTGAATGGCCAGTGCTTCATGTCCTCCTGGACTGTTCTGTCGTCAAA 300840 Query 282664 ATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTG 282723 | || ||||| | | || || || ||||| || || ||| ||| || |||| Sbjct 300839 CTTCCTGCCAATGAGCCTCTTGGCGTCGAAAATTGTGTTTTCTGGGTTACGGGCTTCTTG 300780 Query 282724 ATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGT 282783 | ||| ||||| || || || | ||| || || || |||| || || || || || Sbjct 300779 GTTTTTTGCTGCGTCACCGATTAATCTTTCGGTGTCAGTGAATGCGACGTAGGACGGCGT 300720 Query 282784 TGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTA 282823 ||| | || || || ||||| | || ||||| || ||| Sbjct 300719 TGTCCTGTTTCCCTGGTCATTTGGGATGATTTCTACGTTA 300680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740629958138034