Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq3 125 2e-23 >seq3 Length=1317241 Score = 125 bits (138), Expect = 2e-23 Identities = 327/489 (67%), Gaps = 10/489 (2%) Strand=Plus/Minus Query 110677 CAACTGGACTTGTTCCAATGTT-AAGAGTCTTCAACGACACTGCAAAATATGTGAATCAA 110735 |||| ||| | || || ||| | |||| | || |||| || || || || ||| | ||| Sbjct 1116415 CAACGGGA-TCGTGCCCATGCTGAAGA-TATTTAACGCGACGGCCAAGTACGTGGACCAA 1116358 Query 110736 GGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATA 110792 |||||| || | || ||||||||||| || ||||| || ||||||||| | ||||| Sbjct 1116357 GGTGGTGGAAAACGTAAAGGCTCATTTGCGATATATCTGGAGCCTTGGCATGCGGATATT 1116298 Query 110793 TTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTA 110852 || | || ||||| || | ||||| || || ||||| || | ||| | |||||| Sbjct 1116297 TTCAAGTTGTTAGATCTCAGGAAAAACCACGGCGCAGAAGACCAGCGTGCAAGGGATTTA 1116238 Query 110853 TTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGG 110912 || || || ||||||| |||| | ||||||||||| ||| | | |||| | ||| Sbjct 1116237 TTCTACGCGCTGTGGATCCCAGACCTGTTCATGAAACGAGTTGAGGCAAATAAGAATTGG 1116178 Query 110913 TCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAA 110972 | || |||||||| || | | ||||| || || | ||| | ||||||||| Sbjct 1116177 ACACTGATGTGTCCAGATGAGTGTAGAGGTCTGCACGAGGTTTGGGGAGACGAGTTTGAA 1116118 Query 110973 GACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAA 111032 | || | ||||| | | ||| | || || ||| ||||| | |||| Sbjct 1116117 CGTTTGTATACTCAGTATGAGCAGCAGGGCTTGGGACGAAAGACAATCCCAGC-CCAGAA 1116059 Query 111033 CTT-TGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAA 111091 || ||||| ||| || | || ||| | || ||||| ||||| || || || || || Sbjct 1116058 GTTGTGGTTTGCAATTCTCCAGTCCCAAATCGAGACTGGCACTCCGTACATGTTATACAA 1115999 Query 111092 AGATCATATTAATCGC-AAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATT 111150 || | || | ||| || ||| || |||||| || || ||||| || ||||| Sbjct 1115998 GGA-CGCATGTAACGCTAAGAGTAACCAGCAGAATTTGGGCACTATTAAATCCAGTAACC 1115940 Query 111151 TGTGCTGTG 111159 | ||||||| Sbjct 1115939 TCTGCTGTG 1115931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812663145649