Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_026242.1 Length=145704 Score E Sequences producing significant alignments: (Bits) Value seq8 96.9 3e-15 seq4 87.8 2e-12 >seq8 Length=1835834 Score = 96.9 bits (106), Expect = 3e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| ||||||||||||||||| || ||| ||||||||||| |||||||| |||| ||| Sbjct 899700 GCGGGCATGGTCTAGTGGTTATGACGCCTGCTTTACACGCAGGAGGTCCCGAGTTCGATC 899641 Query 39838 CCCGGTGCCCGTA 39850 | ||||||||||| Sbjct 899640 CTCGGTGCCCGTA 899628 >seq4 Length=570487 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| ||||||||||||||||| || ||| || |||||||| |||||||| |||| | | Sbjct 437053 GCGGGCATGGTCTAGTGGTTATGACGCCTGCTTCACACGCAGGAGGTCCCGAGTTCGAGC 437112 Query 39838 CCCGGTGCCCGTA 39850 | ||||||||||| Sbjct 437113 CTCGGTGCCCGTA 437125 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| |||||| | ||||||||||| ||||| |||| ||| Sbjct 437409 GCGGGCATGGTCTAGTGGCTATGACGTCTGCCTAACACGCAGAAGATCCCGAGTTCGATC 437468 Query 39838 CCCGGTGCCCGTA 39850 | ||||||||||| Sbjct 437469 CTCGGTGCCCGTA 437481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466124747560960