Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1 138 1e-27 >seq1 Length=2540030 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| ||||||| || ||||| | ||||| |||||||| |||||||| || Sbjct 2214227 TTCCACCACGCAACCTCAGTACTAAATGAAGGGTACTTTCCTTTTGGATGTTGTAGTCAC 2214286 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||| || | | || || | ||||||||| ||||||||||||| ||| ||||| | || Sbjct 2214287 TCAAAGTCCTACCATCCTCTAACTGCTTACCAGCAAATATCAACCTCTGTTGGTCTGGAG 2214346 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 | | || ||||| || ||||| ||| | | | | | ||||||||| | || | Sbjct 2214347 GGATGCCTTCCTTATCTTGAATCTTAGCCTTAACATTCTCTATCGTGTCGCTAGGCTCAA 2214406 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| | || || ||||| || || |||||||| || ||||| ||||| Sbjct 2214407 CCTCGAGGGTTATAGTTTTTCCTGTTAAAGTTTTGACGAATATTTGCAT 2214455 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||| ||||||| || |||||||| || || ||||| || | |||| | || || Sbjct 1523581 CACTAAATGTAGGGTGCTCTCCTTCTGGATATTGTAGTCACTGAGTGTTCTACCATCCTC 1523640 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||||| ||||||||||||| ||| ||||| | ||||| | ||||| ||| Sbjct 1523641 TAGCTGCTTACCAGCAAATATCAACCTCTGTTGGTCTGGAGGAATTCCTTCCTTATCCTG 1523700 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 ||||| ||| | | | | | ||||||||| | || ||||| | || || ||||| Sbjct 1523701 AATCTTAGCCTTAACATTCTCTATCGTGTCGCTAGGCTCAACCTCGAGGGTTATAGTTTT 1523760 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || |||||||| || ||||||||||| Sbjct 1523761 TCCTGTTAAAGTTTTGACGAATATCTGCAT 1523790 Score = 111 bits (122), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 35503 TTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTA 35562 ||||| || || | | |||||| ||||| || | ||| || ||||| || |||||||| Sbjct 1523329 TTTATAACCTCCTCTGAGCCTCAAAACCAAGTGAAGCGTGCTTTCCTTCTGGATGTTGTA 1523388 Query 35563 ATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTC 35622 || ||| || | | || || | ||||||||| ||||||||||||| ||| ||||| Sbjct 1523389 GTCACTCAAAGTCCTACCATCCTCTAACTGCTTACCAGCAAATATCAACCTCTGTTGGTC 1523448 Query 35623 CGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGA 35682 | ||||| | ||||| ||| ||||| ||| | | | | | ||||||||| | Sbjct 1523449 TGGAGGAATTCCTTCCTTATCCTGAATCTTAGCCTTAACATTCTCTATCGTGTCGCTAGG 1523508 Query 35683 TTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||| | || || || || || || | ||||| ||||| || ||||| Sbjct 1523509 CTCAACCTCGAGGGTTATAGTCTTGCCAGTGAGGGTTTTAACAAAAATTTGCAT 1523562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793549285720