Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3 232 9e-56 >seq3 Length=1317241 Score = 232 bits (256), Expect = 9e-56 Identities = 875/1357 (64%), Gaps = 43/1357 (3%) Strand=Plus/Plus Query 68698 AGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTA 68757 || ||||| ||||| || | ||| || ||| |||||||| | |||||||||| Sbjct 1115291 AGCAGATGAGGATTTACCACGAAAAACTCACCACTCAACACTCTTCTGTAGTAAATATTA 1115350 Query 68758 CTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGC 68817 || || || ||||| | |||||||| || || ||||| |||| ||| || || ||| Sbjct 1115351 CTAGTGTAAGGTTCAAACGATTCATTGTTGCCAAGAATCTGAGAAGTACTAGCCGTGGGC 1115410 Query 68818 ATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGT 68877 || ||||| | ||||| |||||| || |||||| || | | |||| || | Sbjct 1115411 ATTGGTGCAATGAATAAGGAATTTCTTAGCCCATGTTCACGGAGATCAGCTTTAAGTTTA 1115470 Query 68878 TTCCAATCCCAAAGATCAGATGGTACAACATT-----CCAAAGATCGTATTGTAGAATTC 68932 | ||| ||||| || | || | || | | |||||| || |||||| | | Sbjct 1115471 TCCCAGTCCCAGAG--CGAATTATCCACCTTAGCTCCCCAAAGGTCAAATTGTAATAAAC 1115528 Query 68933 CGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCAC 68992 | || || |||||| | |||||||||||||| || || || || ||| Sbjct 1115529 CCTTGGAGGCCGGTGATCCTTCATATGTTTCATAAGTACCCAGTTGCCTTGCCAGATCAA 1115588 Query 68993 AACTTGCCTCTAA---TGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTT 69049 ||| | || |||| || || |||||||| ||||| ||||| || ||| Sbjct 1115589 TACTCTCAGACAAACATGCA---TAGTACATTGTTTCAAAAATGCGTTTATTAAGTTCTC 1115645 Query 69050 GTGCTTCTA--GACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTG 69107 | || || |||| |||| || || | | || || || | |||||| | || || Sbjct 1115646 GAGCCTCGTCTGACT--CGAACGGGTACCGCATTAGCATGAAGGTATCTGCTAGGCCTTG 1115703 Query 69108 AACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATA 69167 ||||||| ||| || ||||||||||| ||| ||| |||| | | ||| || Sbjct 1115704 TACCCCAACACCCATCGGTCTATGTCTGAAATTAGAAACCCTGGCTTGTTTCACAGGGTA 1115763 Query 69168 ATAATTAATATCTATAATTTTATTAAGATTTCG---GACTACTACTTTAACCACGTCCTT 69224 ||||| | || || | ||||||||| || || ||| || | | || | Sbjct 1115764 GTAATTCCTGTCAATTACTTTATTAAGGTTATAAGTGATTAC-ACGGCAG--ATTTCATA 1115820 Query 69225 TAGTTTGAGAAAATCAAATCGTCCATCTAT-------AACAAACATATTCAGTGCTACAG 69277 ||||| ||||| ||| |||| | | | ||||||| | ||| ||||| | Sbjct 1115821 GAGTTTTTTGAAATCGAAT-GTCCGTGTCTGCGTGTTAACAAACTTTGGCAGCGCTACTG 1115879 Query 69278 ATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATA 69337 | |||| |||||| ||||| ||||| | |||| |||| | || || || | Sbjct 1115880 AAGCTAAATTACACACTGCAACCTCGTCCTTGTTTGTGAATTGGACGATTTCACAGCAGA 1115939 Query 69338 GATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCT 69397 | ||||| |||| ||||| |||| ||| ||||| |||||||| |||||| ||||||| Sbjct 1115940 GGTTACTGGATTTAATAGTGCCCAAATTCTGCTGGTTACTCTTAGCGTTACATGCGTCCT 1115999 Query 69398 TGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCA-AACG 69456 |||| | || ||||||| ||||| || || || || | || ||| | ||| ||| Sbjct 1116000 TGTATAACATGTACGGAGTGCCAGTCTCGATTTGGGACTGGAGAATTGCAAACCACAACT 1116059 Query 69457 ACC---CTAGCATT-TATTACGGTCTTGTAACGCTTCTCTTTTTCATATTGTGTATATAG 69512 | || | ||| | || || | | | || || | |||| || ||||| | Sbjct 1116060 TCTGGGCTGGGATTGTCTTTCGTCCCA--AGCCCTGCTGCT---CATACTGAGTATACAA 1116114 Query 69513 CCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAA 69572 ||||| || || ||||||||||| || | || || ||| |||| ||||||||||| Sbjct 1116115 ACGTTCAAACTCGTCTCCCCAAACCTCGTGCAGACCTCTACACTCATCTGGACACATCAG 1116174 Query 69573 TGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTAT 69632 || ||| | || ||| |||||||||||| || || || || ||||| || || Sbjct 1116175 TGTCCAATTCTTATTTGCCTCAACTCGTTTCATGAACAGGTCTGGGATCCACAGCGCGTA 1116234 Query 69633 AAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTC 69692 || | ||| || | | | ||||| || ||||| | ||||| | |||| Sbjct 1116235 GAATAAATCCCTTGCACGCTGGTCTTCTGCGCCGTGGTTTTTCCTGAGATCTAACAACTT 1116294 Query 69693 CATAATATCAGAATGCCATGGTTCTAGATATATCGC-CATGACTCCCGGTCGTTTATTTC 69751 | |||||| | |||||| || || ||||||||||| |||| || ||||| | Sbjct 1116295 GAAAATATCCGCATGCCAAGGCTCCAGATATATCGCAAATGA-GCCTTTACGTTTTCCAC 1116353 Query 69752 CTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCAT 69811 | || || || | ||| |||| || ||| | | ||||||| || | || || | Sbjct 1116354 CACCTTGGTCCACGTACTTGGCCGTCGCGTTAAATATCTTCAGCATGGGCACGATCCCGT 1116413 Query 69812 TAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATA 69871 | || | || || || || ||| || ||| || || | || || ||| | | Sbjct 1116414 TGGAAATGCCGTTGGTGCCCCTAATGTATGATCCGCTGGCTCTGATTTTGTGAATTGCAA 1116473 Query 69872 GACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATAC 69931 | || ||||| || || |||| || | ||| || | |||| |||| | | || | Sbjct 1116474 GTCCGATTCCACCGGCTGATTTACTTATAAAAGCGCACTGGCTCAAGGTGTTAAAAATCC 1116533 Query 69932 CCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAG 69991 | | | | ||| ||| ||||| ||| || || || ||||||||| | || | | Sbjct 1116534 CAGCCAGGGAATCGTCTTGCATGTCAAGTAGGAAGCAAGAGGACATTTGAGGGTGCCTGG 1116593 Query 69992 TTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAA 70028 ||||||| ||||| || || || | |||||| ||||| Sbjct 1116594 TTCCCGCGTTAAACAAAGTCGGCGTTGCGTGTGTGAA 1116630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908722722760