Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3 149 8e-31 >seq3 Length=1317241 Score = 149 bits (164), Expect = 8e-31 Identities = 787/1238 (64%), Gaps = 39/1238 (3%) Strand=Plus/Plus Query 110471 TGGTCAATGAAGCGCCCCCGTTGTGCCGCCATATCAATGACATCCTTCATCTTAATTTCC 110530 ||||||||||| || || | ||||||||| || || | | ||| |||||| ||| Sbjct 1115105 TGGTCAATGAAAATGCCACGATCTGCCGCCATGTCGATTATGTGTTTCTGCTTAATCTCC 1115164 Query 110531 CAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAA 110590 |||||||| ||| | || ||| |||| | |||||| || || | || | || Sbjct 1115165 CAAACTGTTTTATACAAATCCTTAATATGCTGTGGGATCTCGTCAATGTGCTTTAGTGA- 1115223 Query 110591 CCCCCCGCCTTCACCATGAGATCCT---TCATATCCTTGGACCAGAGACCAATCTTCTTG 110647 ||| | | || || | || |||| || | |||||| || | || | Sbjct 1115224 --CCCGTTGTAGGCGATTAGCTTCTGTTTCATTGTCTCGTTCCAGAGCCCTAGCTCAATC 1115281 Query 110648 AGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGG 110707 | |||||| | || || || || | || ||||||||| | |||||| | Sbjct 1115282 AAGTCATTCAGCAGATGAGGATTTACCACGAAAAACTCACCACTCAACACTCTTCTGTAG 1115341 Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 110767 || || || | ||||| |||||||| ||||||| || || | || || | || Sbjct 1115342 TAAATATTACTAGTGTAAGGTTCAAACGATTCATTGTTGCCAAGAATCTGAGAAGTACTA 1115401 Query 110768 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCT--TCTCCTTGATGCGTT 110825 || || ||||||||||| || || | || | || || | || | ||| | | Sbjct 1115402 GCCGTGGGCATTGGTGCAATGAATAAGGAATTTCTTAGCCCATGTTCACGGAGATCAGCT 1115461 Query 110826 CCTTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTTC-ACCTT-----CCCACATGTCAA 110879 || || ||||||||| || ||| | || ||||| |||| | ||||| Sbjct 1115462 --TTAAGTTTATCCCAGTCCCAG---AGCGAATTATCCACCTTAGCTCCCCAAAGGTCAA 1115516 Query 110880 ACTG-AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTG--GG 110936 | || || | ||||||| | || || || || ||| | |||||||| | ||| | | Sbjct 1115517 ATTGTAATAAACCCTTGG-AGGCCGGTGATCCTTCATATGTTTCATAAGTACCCAGTTGC 1115575 Query 110937 CTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAG 110996 ||| |||| ||| ||| | || |||| | ||||| |||||||| || || Sbjct 1115576 CTT--GCCAGATCAATACTCTCAGACAAACATGCATAGTACATTGTTTCAAAAATGCGTT 1115633 Query 110997 CATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCG 111056 ||| | || || || ||||| || || | ||| || | || || ||| | Sbjct 1115634 TATTAAGTTCTCGAGCCTCGTCTGACTCGAACGGGTACCGCATTAGCATGAAGGTATCTG 1115693 Query 111057 CGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCA-GTC 111115 | || ||||| || || | ||| || ||||| |||| | |||||| | || || Sbjct 1115694 CTAGGCCTTGTACCCCAACACCCATCGGTCTATGTCTGAAATTAGAAACCCTGGCTTGTT 1115753 Query 111116 TCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTG 111175 ||| ||| || |||| |||||||| ||| || || || | || | | | Sbjct 1115754 TCACAGGG-TAGTAATTCCTGTCAATTACTTTATTAAGGTTATAAGTGATTACACGGCAG 1115812 Query 111176 ATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGG 111235 ||||||| ||||||| |||| || || || |||| || ||| ||||||| || Sbjct 1115813 ATTTCATAGAGTTTTTTGAAATCGAATGTCCGTGTCTGCGTGTTAACAAACTTTGGCAGC 1115872 Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295 || | ||| || ||||| || || || ||| ||||| | |||| | | | ||||| Sbjct 1115873 GCTACTGAAGCTAAATTACACACTGCAACCTCGTCCTTGTTTGTGAATTGGACGATTTCA 1115932 Query 111296 GTACATAAGTTGGAACTC---TTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTG 111352 || | ||| ||| ||||| || |||||||||| ||||||||||| ||| Sbjct 1115933 CAGCAGAGGTT---ACTGGATTTAATAGTGCCCAAATTCTGCTGGTTACTCTTAGCGTTA 1115989 Query 111353 CACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCC 111412 || || |||||||| | |||||| || || || ||||| | || || | |||||| || Sbjct 1115990 CATGCGTCCTTGTATAACATGTACGGAGTGCCAGTCTCGATTTGGGACTGGAGAATTGCA 1116049 Query 111413 TTCCA-AACATCGGCGGCTGGTACAATGGCGTTGG--CCCGTCCCTCCGCCTCGTACTTT 111469 ||| ||| || | |||||| | || | || | || |||| | ||| |||| Sbjct 1116050 AACCACAACTTCTG-GGCTGG--GATTGTCTTTCGTCCCAAGCCCTGCTGCTCATACTGA 1116106 Query 111470 GTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGA 111529 || || | ||||||||| || ||| | ||| |||||| || |||||| Sbjct 1116107 GTATACAAACGTTCAAACTCGTCTCCCCAAACCTCGTGCAGACCTCTACACTCATCTGGA 1116166 Query 111530 CAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCAC 111589 || | || | ||| | | | ||||||| || |||||||| |||||||| |||||| Sbjct 1116167 CACATCAGTGTCCAATTCTTATTTGCCTCAACTCGTTTCATGAACAGGTCTGGGATCCAC 1116226 Query 111590 AGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCA 111649 || | | || | ||| || || ||||| | || ||||| | | || Sbjct 1116227 AGCGCGTAGAATAAATCCCTTGCACGCTGGTCTTCTGCGCCGTGGTTTTTCCTGAGATCT 1116286 Query 111650 AGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATA 111687 | |||| | |||||||| ||||| ||||| ||||| Sbjct 1116287 AACAACTTGAAAATATCCGCATGCCAAGGCTCCAGATA 1116324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031929346400