Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3 176 6e-39 >seq3 Length=1317241 Score = 176 bits (194), Expect = 6e-39 Identities = 546/835 (65%), Gaps = 19/835 (2%) Strand=Plus/Plus Query 118449 TACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGT 118508 |||||||||||||||||||| ||| | | | |||||||| || || |||| | Sbjct 1115612 TACATTGTTTCAAAAATGCGTTTATTAAGTTCTCGAGCCTCGTCTGACTCGAACGGGTAC 1115671 Query 118509 CGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTC 118568 || | || || ||| || || ||||| || || | || || || | |||||| Sbjct 1115672 CGCATTAGCATGAAGGTATCTGCTAGGCCTTGTACCCCAACACCCATCGGTCTATGTCTG 1115731 Query 118569 ATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGA 118628 | |||||| || || | ||| || || ||||||| || || || |||| || Sbjct 1115732 AAATTAGAAACCCTGGCTTGTTTCACAGGGTAGTAATTCCTGTCAATTACTTTATTAAGG 1115791 Query 118629 TTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCT 118688 || | |||| || |||||||| || |||| | |||| || | || |||| Sbjct 1115792 TTATAAGTGATTACACGGCAGATTTCATAGAGTTTTTTGAAATCGAATGTCCGTGTCTGC 1115851 Query 118689 TCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTA 118748 || ||| |||| || || || | ||| || | ||||||||| | ||| ||||| Sbjct 1115852 GTGTTAACAAACTTTGGCAGCGCTACTGAAGCTAAATTACACACTGCAACCTCGTCCTTG 1115911 Query 118749 TCAGTGTACTCTATAATTTCCGTGCACAAGTT--TGAACTCTTAATGGTGCCCAAGTTCT 118806 | ||| | | | ||||| ||| | ||| || | ||||| |||||||| |||| Sbjct 1115912 TTTGTGAATTGGACGATTTCACAGCAGAGGTTACTGGA--TTTAATAGTGCCCAAATTCT 1115969 Query 118807 TTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCG 118866 || || ||| | |||||| || |||||||| | |||||| || || || ||||| Sbjct 1115970 GCTGGTTACTCTTAGCGTTACATGCGTCCTTGTATAACATGTACGGAGTGCCAGTCTCGA 1116029 Query 118867 TTTGGGACTTGAGAATAGCCTTCCA-GACATCGGCAGCTGGCACAGTGGCGTTGGCTCGC 118925 ||||||||| |||||| || ||| || || | ||||| | || | || | || | Sbjct 1116030 TTTGGGACTGGAGAATTGCAAACCACAACTTCTG-GGCTGG--GATTGTCTTTCG-TCCC 1116085 Query 118926 ---CCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAG 118982 |||| | ||| |||| || || | ||||||||| || ||| |||| Sbjct 1116086 AAGCCCTGCTGCTCATACTGAGTATACAAACGTTCAAACTCGTCTCCCCAAACCTCGTGC 1116145 Query 118983 AGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTC 119042 || ||| || |||||| || | || | ||| | | ||||||| || ||| Sbjct 1116146 AGACCTCTACACTCATCTGGACACATCAGTGTCCAATTCTTATTTGCCTCAACTCGTTTC 1116205 Query 119043 ATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCT--TCTTCAT 119100 ||||| |||||||||||||| ||||| |||| | ||||| || ||| ||||| Sbjct 1116206 ATGAACAGGTCTGGGATCCACAGCGCGTAGAATAAATCCC--TTGCACGCTGGTCTTCTG 1116263 Query 119101 CCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGT 119160 | || || || | | || || || | | |||||||| ||||| || ||||| | Sbjct 1116264 CGCCGTGGTTTTTCCTGAGATCTAACAACTTGAAAATATCCGCATGCCAAGGCTCCAGAT 1116323 Query 119161 ACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGT 119217 | | ||| | ||| || ||||| | |||| | |||| || ||| | || || |||| Sbjct 1116324 ATATCGCAAATGAGCCTTTACGTTTTCCACCACCTTGGTCCACGTACTTGGCCGTCGCGT 1116383 Query 119218 TAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAAT 119272 |||||| ||||| || | ||| || | ||| ||| || || |||| ||| Sbjct 1116384 TAAATATCTTCAGCATGGGCACGATCCCGTTGGAAATGCCGTTGGTGCCCCTAAT 1116438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618435130426040