Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2 197 4e-45 seq1 127 6e-24 seq3 93.3 1e-13 >seq2 Length=1971884 Score = 197 bits (218), Expect = 4e-45 Identities = 944/1488 (63%), Gaps = 17/1488 (1%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 || || ||||| || || ||||| || || || ||||| || || | | | || Sbjct 300624 GCAATTGGAATTGACTTGGGTACCACATACTCCTGTGTGGCGGTATACAAGGACAATAAC 300683 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 |||||||| || ||||||| || || ||||| |||||||| || ||||| ||||| || Sbjct 300684 GTAGAAATCATCCCAAATGACCAGGGAAACAGGACAACGCCGTCCTACGTCGCATTCACT 300743 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || || | | || ||||| | |||||||| |||| || ||| ||| |||| Sbjct 300744 GACACCGAAAGATTAATCGGTGACGCAGCAAAAAACCAAGAAGCCCGTAACCCAGAAAAC 300803 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACACAATC 349437 || |||| || || ||| | || ||||| || |||||| | |||| | | || Sbjct 300804 ACAATTTTCGACGCCAAGAGGCTCATTGGCAGGAAGTTTGAC-GACAGAACAGTCCAGGA 300862 Query 349438 TGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGT--GATAAACCAATTATT 349495 || | || || | || || | ||| |||| ||| | || || | ||| Sbjct 300863 GGACATGAAGCACTGGCCATTCAAAGTTA--CCAACGGACCAAACGGAAAGCCGAACATT 300920 Query 349496 GAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCC-GAAGAAATTTCATCAATGGT 349554 || || | |||||||| || || | || || | || || || || || ||||| Sbjct 300921 GAAGTGACCTTCCAAGGTGAA-AAGAAGACCTTCCACGCAGAGGAGATATCCTCCATGGT 300979 Query 349555 TTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGT 349614 | || ||||||||||| || ||||| | ||| || | | || | || | || Sbjct 300980 CCTTACCAAGATGAAGGAAATAGCCGAAGCCTTTTTGGGAAAGAGCGTCAAGGACGTCGT 301039 Query 349615 TATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAG 349674 || || || |||||||| || || || | || | ||||| || || || || | Sbjct 301040 CATCACCGTTCCAGCCTACTTCAACGACTCTCAAAGACAAGCAACCAAGGACGCCGGAAC 301099 Query 349675 CATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATA 349734 ||| || || | ||||| | || || || || || || ||||| ||||| || || || Sbjct 301100 CATAGCCGGACTCAATGTCATGAGGATCATCAACGAGCCAACTGCAGCAGCCATAGCCTA 301159 Query 349735 TGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGG 349794 || | ||||| | | | | | || || || || | || || ||||| |||||||| Sbjct 301160 CGGTTTAGATAAGAAGGGCGGCGGTGAGAAGAACGTTTTAATATTCGATTTGGGTGGTGG 301219 Query 349795 TACTTTTGATG-TATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTG 349853 ||| || |||| || || || | || | ||||| || || || ||||| || || || | Sbjct 301220 TACCTTCGATGTTAGCA-TATTGACCATAGAAGATGGTATCTTCGAAGTCAAGGCCACAG 301278 Query 349854 CTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTA 349913 | |||||||| || | ||||||||||| ||||| || | | || ||| | ||| Sbjct 301279 CAGGTGATACTCACTTGGGTGGAGAAGACTTTGACAACCTCTTGGTCGAGCACTGTGTCC 301338 Query 349914 AAGAATTTAAGCGTCAAGCTAAAATTGATATTGGAGATAATC-----CTAGAGCAATGCG 349968 || || | ||| | | | ||| || | | | ||| ||||| | | Sbjct 301339 GCGACTTCATGCG-CTTG-AACAATGGAAAGAACATCTCATCAAACAAGAGAGCTCTAAG 301396 Query 349969 TCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTC 350028 | ||||| || ||||||||||| ||| | | ||| | ||||| || | Sbjct 301397 GAGACTAAGGACCCACTGTGAACGTGCAAAGAGAGTACTCTCAAGCTCAACCCAGGCCAC 301456 Query 350029 TATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCG 350088 |||||| | || ||||| || |||| || | | | | |||| | || | Sbjct 301457 CATTGAACTCGACTCTCTATACGAGGGCATTGACTACAACACCACCATTAGCAGGGCAAG 301516 Query 350089 GTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATT 350148 ||| || || | |||| || || ||| ||| ||| ||| || || || | | | Sbjct 301517 GTTCGAGGAGCTCTGTAACGAGAAGTTCAGAAGCACACTGGTTCCAGTTGAGAAGGCACT 301576 Query 350149 AAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTAC 350208 | || | | ||| | || | ||||| || ||||| ||||| ||| Sbjct 301577 TGAGTCCTCAGGACTTGACAAGAGAAGCATCCACGAAGTCGTGTTAGTCGGTGGAAGTAC 301636 Query 350209 ACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAG 350268 | ||||| || | ||| | | | || || || || || || || | || Sbjct 301637 CAGAATTCCCAAGATCCAAACCCTCATCAAGAACTTCTTCAACGGAAAGGAGCCATGCAG 301696 Query 350269 ATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATC 350328 ||||| || ||||| ||||| ||||| || ||||| || || || || | || || || Sbjct 301697 GTCAATCAACCCAGACGAAGCAGTTGCCTACGGTGCAGCAGTCCAAGCCGCCATCTTGTC 301756 Query 350329 TGGAAATAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCT 350388 |||||| || | || || | || | | || | ||||| ||||| | ||||| Sbjct 301757 TGGAAACCAGTCTGAGAAGATCCAGGAATTGCTCCTGTTGGATGTCGCTCCATTGTCGCT 301816 Query 350389 TGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACC 350448 ||| || ||||| | |||| || |||||||| | || ||||| | || | || Sbjct 301817 TGGTTTGGAAACCGCAGGTGGTGTTATGACTGTCTTGATCAAGAGAAACACAACCATCCC 301876 Query 350449 TACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCA 350508 || || ||| ||||| || | || | |||| || || || ||||| Sbjct 301877 AACCAAGAAGAACCAAATCTTCACAACCAACGAGGATAGGCAAGAAGGTGTTTTGATTCA 301936 Query 350509 AGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCT 350568 || ||||||||||||||||| || || || || || || ||| | || ||| Sbjct 301937 GGTGTTTGAAGGTGAACGTGCAATGACCAAGGACAACAACTTGCTCGGAAAGTTCCACCT 301996 Query 350569 AAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGA 350628 || | ||| | || || ||||| |||||||| ||||||||| | ||||| ||||| Sbjct 301997 AACAGGAATCGCTCCCGCTCCAAGAGGTGTTCCTCAAATTGAAGTCACCTTCGACATTGA 302056 Query 350629 TTCAAATGGTATTTTAAATGTTACCGCAGTTGAAAAATCAAGTGGTAA 350676 |||||||||| || || || ||||| | || || || | ||| || Sbjct 302057 CGCAAATGGTATCTTGAACGTCACCGCCATGGACAAGTCGACTGGAAA 302104 >seq1 Length=2540030 Score = 127 bits (140), Expect = 6e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||| || | | ||| || || | ||| || || ||| || || ||||| | Sbjct 1523556 TTTGCATACCTCCTCTGAGTCTAAGCACTAAATGTAGGGTGCTCTCCTTCTGGATATTGT 1523615 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | ||| | ||||| ||||| || || || || |||||||| || | | || || | Sbjct 1523616 AGTCACTGAGTGTTCTACCATCCTCTAGCTGCTTACCAGCAAATATCAACCTCTGTTGGT 1523675 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | |||||||||||||| ||||||||||| ||||| || ||||| || |||| || | Sbjct 1523676 CTGGAGGAATTCCTTCCTTATCCTGAATCTTAGCCTTAACATTCTCTATCGTGTCGCTAG 1523735 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| || || || | || ||||| |||| ||||| || || |||||||| Sbjct 1523736 GCTCAACCTCGAGGGTTATAGTTTTTCCTGTTAAAGTTTTGACGAATATCTGCAT 1523790 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 140547 TCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAG 140606 || || || || || || ||| || || | ||||| || | || || |||||||| Sbjct 1523372 TCCTTCTGGATGTTGTAGTCACTCAAAGTCCTACCATCCTCTAACTGCTTACCAGCAAAT 1523431 Query 140607 ATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTA 140666 || | | || || || |||||||||||||| ||||||||||| ||||| || ||||| Sbjct 1523432 ATCAACCTCTGTTGGTCTGGAGGAATTCCTTCCTTATCCTGAATCTTAGCCTTAACATTC 1523491 Query 140667 TCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACA 140726 || |||| || || ||||| || || || | ||||| || || || ||||| ||| Sbjct 1523492 TCTATCGTGTCGCTAGGCTCAACCTCGAGGGTTATAGTCTTGCCAGTGAGGGTTTTAACA 1523551 Query 140727 AAAATCTGCAT 140737 ||||| ||||| Sbjct 1523552 AAAATTTGCAT 1523562 Score = 84.2 bits (92), Expect = 7e-11 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 423765 AGCATGGATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTGG-CGAAAG-CCTC 423822 |||| ||||| ||||| |||| |||| | |||||| ||| |||| ||| ||| || |||| Sbjct 1255052 AGCACGGATGGCCGAGCGGTCAAAGGCGCCAGACTCAAGTTCTGGTGGGCGAGAGTCCTC 1254993 Query 423823 GTGGGTTCAAACCCCACTCCGTGCA 423847 ||||||||||| |||||| |||||| Sbjct 1254992 GTGGGTTCAAATCCCACTTCGTGCA 1254968 >seq3 Length=1317241 Score = 93.3 bits (102), Expect = 1e-13 Identities = 76/90 (84%), Gaps = 3/90 (3%) Strand=Plus/Minus Query 423760 TTAAGAGCATGGATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTGGC--GAAA 423817 |||| ||| ||||||||||||||| |||||||| ||||||||||||| |||| || Sbjct 1277839 TTAATCGCACGGATGCCCGAGTGGT-TAAGGGGGGAGACTTAAGATCTTCTGGTTTGATG 1277781 Query 423818 GCCTCGTGGGTTCAAACCCCACTCCGTGCA 423847 || ||||||||| |||||||||||||||| Sbjct 1277780 ACCGCGTGGGTTCGAACCCCACTCCGTGCA 1277751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515254225272227