Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq3 129 6e-25 >seq3 Length=1317241 Score = 129 bits (142), Expect = 6e-25 Identities = 466/718 (65%), Gaps = 12/718 (2%) Strand=Plus/Plus Query 79126 GACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCAC 79185 || || || ||||| | |||| |||||| ||||| ||||||| ||||||||||| || Sbjct 1115948 GATTTAATAGTGCCCAAATTCTGCTGGTTACTCTTAGCGTTACATGCGTCCTTGTATAAC 1116007 Query 79186 ATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCC 79245 |||||||| || || ||||| | || || ||||| | ||| | | | |||| Sbjct 1116008 ATGTACGGAGTGCCAGTCTCGATTTGGGACTGGAGAATTGCAAACCACAACTTCTGGGCT 1116067 Query 79246 CGGACAACCTTCTTGTACCGA-CCCTG-TGCGACGTACGTCCGGTACAACTCGTTGAAA- 79302 ||| ||| | || || | ||||| ||| | ||| ||||| |||| ||| Sbjct 1116068 GGGATTGTCTT-TCGTCCCAAGCCCTGCTGCT-CATACTGAGTATACAAA-CGTTCAAAC 1116124 Query 79303 --GCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGT 79360 | ||||||| | | ||| |||| || ||||| | || |||||||| ||| | Sbjct 1116125 TCGTCTCCCCAAA--CCTCGTGCAGACCTCTACACTCATCTGGACACATCAGTGTCCAAT 1116182 Query 79361 CCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGT 79420 || | |||||| | |||||| ||||| ||||||||||| || ||| | | Sbjct 1116183 TCTTATTTGCCTCAACTCGTTTCATGAACAGGTCTGGGATCCACAGCGCGTAGAATAAAT 1116242 Query 79421 CGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGT 79480 | | |||| || || |||| ||||| | || || | || | | || | Sbjct 1116243 CCCTTGCACGCTGGTCTTCTGCGCCGTGGTTTTTCCTGAGATCTAACAACTTGAAAATAT 1116302 Query 79481 CGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGT 79540 | || ||||| ||||||||||| || || || || || || || || || || || |||| Sbjct 1116303 CCGCATGCCAAGGCTCCAGATATATCGCAAATGAGCCTTTACGTTTTCCACCACCTTGGT 1116362 Query 79541 TGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGC 79600 |||||| |||||| ||| || | |||||||||||||| |||| || | || Sbjct 1116363 CCACGTACTTGGCCGTCGCGTTAAATATCTTCAGCATGGGCACGATCCCGTTGGAAATGC 1116422 Query 79601 CGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTG-GATTCCGATG 79659 |||| || || | || || ||||| || | || || | | | || | |||||| Sbjct 1116423 CGTTGGTGCCCCTAATGTATGATCCGCTGGCTCTGAT-TTTGTGAATTGCAAGTCCGATT 1116481 Query 79660 CCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATC 79719 || |||| | || || ||||||| | | || | | || || | | Sbjct 1116482 CCACCGGCTGATTTACTTATAAAAGCGCACTGGCTCAAGGTGTTAAAAATCCCAGCCAGG 1116541 Query 79720 GAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCG 79779 || ||||| | ||| | | |||||||| ||||| || |||| | || || ||| Sbjct 1116542 GAATCGTCTTGCATGTCAAGTAGGAAGCAAGAGGACATTTGAGGGTGCCTGGTTCCCGCG 1116601 Query 79780 TTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCT 79837 || || | |||||||| ||||| |||||| | ||| ||||| || | || |||| Sbjct 1116602 TTAAACAAAGTCGGCGTTGCGTGTGTGAAGTAACGTTGACTCATGAGGTGATAGGTCT 1116659 Score = 91.5 bits (100), Expect = 2e-13 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 78188 GTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATAC 78247 |||| | |||||||| | ||||| || | |||||| ||||| || || | |||||||| Sbjct 1114992 GTGTCCTTAAATAGTAAACTCCCGTTTTCAAACCCTTTTTCCAGCCATAAAAGTGCATAC 1115051 Query 78248 TCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGA 78307 ||| ||||| | |||| | |||||| |||||||| || || |||||||| | Sbjct 1115052 TCGTGAGCTTACTGAATGTCGGCTGTTCCATGTGAATGTTGAGTGATTGAGACTGGTCAA 1115111 Query 78308 TGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCA 78362 || | || || || |||||||||||||| | || ||| ||||||||| Sbjct 1115112 TGAAAATGCCACGATCTGCCGCCATGTCGATTATGTGTTTCTGCTTAATCTCCCA 1115166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524738290960