Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1 145 9e-30 seq3 96.9 4e-15 seq2 87.8 2e-12 >seq1 Length=2540030 Score = 145 bits (160), Expect = 9e-30 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || || || ||||||||||| || || ||||||||| | | Sbjct 1523562 ATGCAAATTTTTGTTAAAACCCTCACTGGCAAGACTATAACCCTCGAGGTTGAGCCTAGC 1523503 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | |||||||| |||||||| ||||| ||||||||||||||||| Sbjct 1523502 GACACGATAGAGAATGTTAAGGCTAAGATTCAGGATAAGGAAGGAATTCCTCCAGACCAA 1523443 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || |||||||||||||| | ||||||| | | || | ||||| || Sbjct 1523442 CAGAGGTTGATATTTGCTGGTAAGCAGTTAGAGGATGGTAGGACTTTGAGTGACTACAAC 1523383 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 |||| |||||| ||| ||||| Sbjct 1523382 ATCCAGAAGGAAAGCACGCTTCA 1523360 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || ||||| || | || || || ||||| || || ||||||||| | | Sbjct 1523790 ATGCAGATATTCGTCAAAACTTTAACAGGAAAAACTATAACCCTCGAGGTTGAGCCTAGC 1523731 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | |||||||| |||||||| ||||| ||||||||||||||||| Sbjct 1523730 GACACGATAGAGAATGTTAAGGCTAAGATTCAGGATAAGGAAGGAATTCCTCCAGACCAA 1523671 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || |||||||||||||| || ||||||| | | || || ||||| ||| Sbjct 1523670 CAGAGGTTGATATTTGCTGGTAAGCAGCTAGAGGATGGTAGAACACTCAGTGACTACAAT 1523611 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 |||| ||||| ||| || ||| |||| Sbjct 1523610 ATCCAGAAGGAGAGCACCCTACATTTAGT 1523582 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||| || | || || || ||||| || || ||||||||| | | Sbjct 2214455 ATGCAAATATTCGTCAAAACTTTAACAGGAAAAACTATAACCCTCGAGGTTGAGCCTAGC 2214396 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | |||||||| ||||| || ||||| || || ||||||||||| Sbjct 2214395 GACACGATAGAGAATGTTAAGGCTAAGATTCAAGATAAGGAAGGCATCCCTCCAGACCAA 2214336 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || |||||||||||||| | ||||||| | | || | ||||| || Sbjct 2214335 CAGAGGTTGATATTTGCTGGTAAGCAGTTAGAGGATGGTAGGACTTTGAGTGACTACAAC 2214276 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 ||||||||||| || |||||| |||| || | | || |||||| Sbjct 2214275 ATCCAAAAGGAAAGTACCCTTCATTTAGTACTGAGGTTGCGTGGTGGA 2214228 >seq3 Length=1317241 Score = 96.9 bits (106), Expect = 4e-15 Identities = 502/789 (64%), Gaps = 23/789 (3%) Strand=Plus/Plus Query 80908 GACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCAC 80967 || || | ||| ||||| || ||||| || | ||| || | ||||||||| ||| Sbjct 1115879 GAAGCTAAATTACACACTGCAACCTCGTCCTTGTTTGTGAATTGGACGATTTCACAGCAG 1115938 Query 80968 AAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCC 81027 | ||| || ||||| || |||| || | |||||| ||| ||||| || |||||| Sbjct 1115939 AGGTTACTGGATTTAATAGTGCCCAAATTCTGCTGGTTACTCTTAGCGTTACATGCGTCC 1115998 Query 81028 TTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATC 81087 ||||| |||||||||| || || ||||||| || |||| ||| || || ||| | | Sbjct 1115999 TTGTATAACATGTACGGAGTGCCAGTCTCGATTTGGGACTGGAGAATTGCAAACCACAAC 1116058 Query 81088 TCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGT--AAGCTT 81145 | | || || ||| || ||| | | |||||| | | || | | Sbjct 1116059 TTCTGGGCTGGGATTGTCTTTCGTCCCAAGCCCTGCTGCTCATACTGAGTATACAAACGT 1116118 Query 81146 CGTCGAACTTGGCACCGTGAAGTTCAGTG-AGGTCTGGGCACTCGTTAGGGCACATCAGG 81204 || |||| | | || || || ||| || || ||||| | || |||||||| Sbjct 1116119 --TCAAACTCGTCTCCCCAAACCTC-GTGCAGACCTCTACACTCATCTGGACACATCAGT 1116175 Query 81205 TGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTG 81264 ||| | | | ||| || |||||||| ||| |||||||| || ||| | Sbjct 1116176 GTCCAATTCTTATTTGCCTCAACTCGTTTCATGAACAGGTCTGGGATCCACAGCGCGTAG 1116235 Query 81265 AACAGGTCGC-GGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTC 81323 || | || | ||| ||| || || | || ||||| | | || | || | Sbjct 1116236 AATAAATCCCTTGCA-CGCTGGTCTTCTGCGCCGTGGTTTTTCCTGAGATCTAACAACTT 1116294 Query 81324 CATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG---ACGGCC 81380 | || ||||||||||| ||||||||||| | || | || || || || | || Sbjct 1116295 GAAAATATCCGCATGCCAAGGCTCCAGATATATCGCAAATGAGCCTTTACGTTTTCCACC 1116354 Query 81381 ACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATC 81440 ||| |||| ||||| ||| ||||||||||||| || ||| || | ||| || | Sbjct 1116355 ACCTTGGTCCACGTACTTGGCCGTCGCGTTAAATATCTTCAGCATGGGCACGATCCCGTT 1116414 Query 81441 TGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAG 81500 || ||||| || ||| || || || |||| | | ||| |||| ||| Sbjct 1116415 GGAAATGCCGTTGGTGCCCCTAATGTATGATCCGCTGGCTCTGATTTTGTGAATTGCAAG 1116474 Query 81501 ACCGATGCCAC---CTGA-CCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAA 81556 ||||| |||| |||| |||| ||| ||| ||| || ||| ||| | | ||| Sbjct 1116475 TCCGATTCCACCGGCTGATTTACTTATAAA----AGCGCACTGGCTCAAGGTGTTAAAAA 1116530 Query 81557 TTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTT 81616 | || | | | ||| | || ||||||||| | ||| || ||||| |||||| Sbjct 1116531 TCCCAGCCAGGGAATCGTCTTGCATGTCAAGTAGGAAGCAAGAGGACATTTGAGGGTGCC 1116590 Query 81617 TTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGA--CATCAG 81674 | | || || || |||| || || || ||||| |||| ||||| |||| ||| || Sbjct 1116591 TGGTTCCCGCGTTAAACAAAGTCGGCGTTGCGTGTGTGAAGTAACG--TTGACTCATGAG 1116648 Query 81675 GTCATAGGT 81683 || |||||| Sbjct 1116649 GTGATAGGT 1116657 Score = 86.0 bits (94), Expect = 7e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 |||| | |||||| | ||||| || | ||||| |||||||| || | ||||||| Sbjct 1114994 GTCCTTAAATAGTAAACTCCCGTTTTCAAACCCTTTTTCCAGCCATAAAAGTGCATACTC 1115053 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 ||||||| | ||| || | |||||| ||||| || || |||||||| ||| Sbjct 1115054 GTGAGCTTACTGAATGTCGGCTGTTCCATGTGAATGTTGAGTGATTGAGACTGGTCAATG 1115113 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGTA 80217 ||| ||||||||||||||||| || || || || || ||| ||||| ||||| Sbjct 1115114 AAAATGCCACGATCTGCCGCCATGTCGATTATGTGTTTCTGCTTAATCTCCCAAACTGTT 1115173 Query 80218 CGATACA 80224 ||||| Sbjct 1115174 TTATACA 1115180 >seq2 Length=1971884 Score = 87.8 bits (96), Expect = 2e-12 Identities = 181/267 (68%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 31984 GACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGTCG 32043 ||||| ||||||| |||||| ||||| | | | ||| | ||| ||| || | Sbjct 930580 GACGGGTTCAAGCCGGGACAGCGTAAGGTTTTGTTTGGCTGTTTTAAGCGTAACTTGAAG 930521 Query 32044 AGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCAC 32103 | || ||||| || || || | || ||| | || ||||| | || ||||||||| Sbjct 930520 AACGAGTGTAAGGTAGCACAACTTACTGGATACATTGCTGAGCACTCAGCTTATCACCAC 930461 Query 32104 GGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAAT 32163 || || ||| | || || ||||| ||| | || ||| ||||||| || |||| Sbjct 930460 GGTGAAAACTCGTTACAACAGACAATTGTAAACATGGCACAGGACTTTGTAGGCTCAAAC 930401 Query 32164 AACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGAT 32223 ||| | ||| ||||| |||| |||||||||||| | | || | ||||| || || Sbjct 930400 AACATTAACCTACTCCTTCCATGTGGACAGTTTGGTAGCAGGAAAGAGGGTGGTAAAGAC 930341 Query 32224 GCTGCGAGC-TCCCGTTACATCTTCAC 32249 || || ||| | |||||||| ||||| Sbjct 930340 GCAGC-AGCAGCACGTTACATATTCAC 930315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310335840080