Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1 102 5e-17 >seq1 Length=2540030 Score = 102 bits (112), Expect = 5e-17 Identities = 166/235 (71%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | | ||| ||||| || ||||||||||| || || || || || Sbjct 1523564 CCTCCTCTGAGTCTAAGCACTAAATGTAGGGTGCTCTCCTTCTGGATATTGTAGTCACTG 1523623 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| | || || || || ||||| |||||||| || | ||||||||| || || Sbjct 1523624 AGTGTTCTACCATCCTCTAGCTGCTTACCAGCAAATATCAACCTCTGTTGGTCTGGAGGA 1523683 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT---CTC 34655 | ||| ||||| || ||| || | ||||| | || ||| ||||| ||| Sbjct 1523684 ATTCCTTCCTTATC-CTGAATCTTAGCCTTAACATTCTCTATCGTG---TCGCTAGGCTC 1523739 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || || | |||||| ||||| || ||||| ||||| || || |||||||| ||| Sbjct 1523740 AACCTCGAGGGTTATAGTTTTTCCTGTTAAAGTTTTGACGAATATCTGCATATTG 1523794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729565478097