Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1 113 1e-19 >seq1 Length=2540030 Score = 113 bits (124), Expect = 1e-19 Identities = 152/208 (73%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCT 210969 |||||| ||| || || |||||||| || || | ||| | |||| ||||| || | || Sbjct 1523359 GTGAAGCGTGCTTTCCTTCTGGATGTTGTAGTCACTCAAAG-TCCTACCATCCTCTAACT 1523417 Query 210970 GCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCT 211029 |||| || || || || | | |||||||| ||||||| ||||||||| ||||| |||| Sbjct 1523418 GCTTACCAGCAAATATCAACCTCTGTTGGTCTGGAGGAATTCCTTCCTTATCCTGAATCT 1523477 Query 211030 TTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATCGTCTTTC 211086 | || || || || || ||||| ||| ||||||||||| || || ||||| | Sbjct 1523478 TAGCCTTAACATTCTCTATCGTGTC---GCTAGGCTCAACCTCGAGGGTTATAGTCTTGC 1523534 Query 211087 CCGTGAGAGTCTTTACAAACACCTGCAT 211114 | ||||| || || ||||| | ||||| Sbjct 1523535 CAGTGAGGGTTTTAACAAAAATTTGCAT 1523562 Score = 107 bits (118), Expect = 4e-18 Identities = 159/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| || || | || || ||| ||| || ||||| || || || || || || Sbjct 1523573 AGTCTAAGCACTAAATGTAGGGTGCTCTCCTTCTGGATATTGTAGTCACTGAGTGTTCTA 1523632 Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 ||||| || |||||||| || || || || | | |||||||| ||||||| ||||||| Sbjct 1523633 CCATCCTCTAGCTGCTTACCAGCAAATATCAACCTCTGTTGGTCTGGAGGAATTCCTTCC 1523692 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGA 211073 || ||||| ||||| || || || || || ||||| ||| ||||||||||| Sbjct 1523693 TTATCCTGAATCTTAGCCTTAACATTCTCTATCGTGTC---GCTAGGCTCAACCTCGAGG 1523749 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || ||||| || | ||| || || || | |||||| || Sbjct 1523750 GTTATAGTTTTTCCTGTTAAAGTTTTGACGAATATCTGCATATT 1523793 Score = 89.7 bits (98), Expect = 1e-12 Identities = 141/198 (71%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 210924 TCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAA 210982 || ||||||||||| || || | ||| ||||| ||||| || | |||||| || || || Sbjct 2214265 TCCTTTTGGATGTTGTAGTCACTCAA-AGTCCTACCATCCTCTAACTGCTTACCAGCAAA 2214323 Query 210983 GATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTT 211042 || | | |||||||| ||||| | |||||||| || || ||||| || || || Sbjct 2214324 TATCAACCTCTGTTGGTCTGGAGGGATGCCTTCCTTATCTTGAATCTTAGCCTTAACATT 2214383 Query 211043 TTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTT 211099 || || ||||| ||| ||||||||||| || || || ||||| || | ||| || Sbjct 2214384 CTCTATCGTGTC---GCTAGGCTCAACCTCGAGGGTTATAGTTTTTCCTGTTAAAGTTTT 2214440 Query 211100 TACAAACACCTGCATTTT 211117 || || | ||||| || Sbjct 2214441 GACGAATATTTGCATCTT 2214458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151866335285