Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 1e-13 seq9 91.5 4e-13 >seq1 Length=2540030 Score = 93.3 bits (102), Expect = 1e-13 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 ||||| || || | || || ||| || || |||| |||||| || | ||||| Sbjct 1523573 AGTCTAAGCACTAAATGTAGGGTGCTCTCCTTCTGGATATTGTAGTCACTGAGTGTTCTA 1523632 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 ||||| ||||||||||| ||||| || || | | |||||||| || ||||| |||||| Sbjct 1523633 CCATCCTCTAGCTGCTTACCAGCAAATATCAACCTCTGTTGGTCTGGAGGAATTCCTTCC 1523692 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 || || || ||||| ||| ||| || || ||||| | || || || | || Sbjct 1523693 TTATCCTGAATCTTAGCCTTAACATTCTCTATCGTGTCGCTAGGCTCAACCTCGAGGGTT 1523752 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || || || || |||||||| | ||| | ||||| || Sbjct 1523753 ATAGTTTTTCCTGTTAAAGTTTTGACGAATATCTGCATATT 1523793 >seq9 Length=39579 Score = 91.5 bits (100), Expect = 4e-13 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 7735 TTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCT 7794 |||||||||||||| | ||| ||| ||| | |||| ||| | |||||| || || Sbjct 1063 TTGGTAAGATTCTTAGGGTTTCATC-TATTCTTCAACATGACCCATCACTTATATAAGCT 1005 Query 7795 TCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTT-ACG 7853 ||||||||| |||| | ||||| |||||| |||| || ||||| | ||||||| ||| Sbjct 1004 CCCGTCAGTTCCTTTAAATTTTATTCTTGCGAACGTACTATTCAGGCGAAATATTTAACG 945 Query 7854 CGTTAGCTT 7862 ||||||||| Sbjct 944 CGTTAGCTT 936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192531062486246