Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3 215 7e-51 >seq3 Length=1317241 Score = 215 bits (238), Expect = 7e-51 Identities = 687/1056 (65%), Gaps = 41/1056 (4%) Strand=Plus/Plus Query 77106 AGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTA 77165 || ||||||||||| || | ||| || ||| ||| ||||| | |||||||||| Sbjct 1115291 AGCAGATGAGGATTTACCACGAAAAACTCACCACTCAACACTCTTCTGTAGTAAATATTA 1115350 Query 77166 CTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGC 77225 || || || ||||| | ||||||||||| || | ||| |||| |||| ||| || ||| Sbjct 1115351 CTAGTGTAAGGTTCAAACGATTCATTGTTGCCAAGAATCTGAGAAGTACTAGCCGTGGGC 1115410 Query 77226 ATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATAT 77285 || ||||| | ||||| |||||| || |||||| | || | | |||| || | Sbjct 1115411 ATTGGTGCAATGAATAAGGAATTTCTTAGCCCATGTTCACGGAGATCAGCTTTAAGTTTA 1115470 Query 77286 TTCCAATCCCAAAGATCTGAAGGTACAACAT-----CCCAAAGATCGTATTGTAGAATTC 77340 | ||| |||| ||| | | | || | | ||||||| || |||||| | | Sbjct 1115471 TCCCAGTCCC--AGAGCGAATTATCCACCTTAGCTCCCCAAAGGTCAAATTGTAATAAAC 1115528 Query 77341 CGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTC--AGCTAGTTC 77398 | || || |||||| | |||||||||||||| || | ||| | || || || Sbjct 1115529 CCTTGGAGGCCGGTGATCCTTCATATGTTTCATAAGTACC--CAGTTGCCTTGCCAGATC 1115586 Query 77399 ACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTG 77458 | |||| | ||| | | || || |||||||| ||||| ||||| || ||| | Sbjct 1115587 AATACTCTCAGACAAACATGCATAGTACATTGTTTCAAAAATGCGTTTATTAAGTTCTCG 1115646 Query 77459 TGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAAC 77518 || || || ||||| || | | || || |||| |||||||| || || || Sbjct 1115647 AGCCTCGTCTGACTCGAACGGGTACCGCATTAGCATGAAGGTATCTGCTAGGCCTTGTAC 1115706 Query 77519 TCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATA 77578 |||| ||| || ||||||||||| ||| |||| | |||| | | ||| || || Sbjct 1115707 CCCAACACCCATCGGTCTATGTCTGAAATTAGAAACCCTGGCTTGTTTCACAGGGTAGTA 1115766 Query 77579 ATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAAC----CACGTCCTTTA 77634 ||| |||| || | |||||| || || | || | || || | || | | Sbjct 1115767 ATTCCTGTCAATTACTTTATTAAGGTT----ATAAGTGATTACACGGCAGATTTCATAGA 1115822 Query 77635 GTTTAAGAAAATCAAATCTTC-CATCT-----ATAACAAACATGTTCAAAGCTATAGATG 77688 |||| ||||| ||| | | ||| |||||||| | || |||| || | Sbjct 1115823 GTTTTTTGAAATCGAATGTCCGTGTCTGCGTGTTAACAAACTTTGGCAGCGCTACTGAAG 1115882 Query 77689 CTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGAT 77748 ||| |||||| ||||| ||||| | ||| | |||| | || || || || | Sbjct 1115883 CTAAATTACACACTGCAACCTCGTCCTTGTTTGTGAATTGGACGATTTCACAGCAGAGGT 1115942 Query 77749 TACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTAT 77808 |||| |||| |||||||||| ||| || ||||| ||||| || |||| |||||| | Sbjct 1115943 TACTGGATTTAATAGTGCCCAAATTCTGCTGGTTACTCTTAGCGTTACATGCGTCCTTGT 1116002 Query 77809 AAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTC 77868 | | || ||||||| || || || || || || | | ||| || || || || Sbjct 1116003 ATAACATGTACGGAGTGCCAGTCTCGATTTGGGACTGG-----AGAATTGCAAACCAC-- 1116055 Query 77869 TAGCTT-TTATCATAGATT-TGTATCG--CCTCTCTCT----TTCATATTGAGTATATAG 77920 | ||| | | |||| | | ||| || | || ||||| |||||||| | Sbjct 1116056 -AACTTCTGGGCTGGGATTGTCTTTCGTCCCAAGCCCTGCTGCTCATACTGAGTATACAA 1116114 Query 77921 CCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAA 77980 |||||||| || ||||||||||| || | || || || |||| ||| ||||||| Sbjct 1116115 ACGTTCAAACTCGTCTCCCCAAACCTCGTGCAGACCTCTACACTCATCTGGACACATCAG 1116174 Query 77981 TGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAAT 78040 || ||| | || | ||| |||||||||||| || || || || ||||| || || Sbjct 1116175 TGTCCAATTCTTATTTGCCTCAACTCGTTTCATGAACAGGTCTGGGATCCACAGCGCGTA 1116234 Query 78041 AAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTC 78100 |||| ||| | | | || ||||| || || || | ||||| | |||| Sbjct 1116235 GAATAAATCCCTTGCACGCTGGTCTTCTGCGCCGTGGTTTTTCCTGAGATCTAACAACTT 1116294 Query 78101 CATAATATCAGAATGCCATGGTTCTAGATATATTGC 78136 | |||||| | |||||| || || |||||||| || Sbjct 1116295 GAAAATATCCGCATGCCAAGGCTCCAGATATATCGC 1116330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668721849760