Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3 210 3e-49 >seq3 Length=1317241 Score = 210 bits (232), Expect = 3e-49 Identities = 875/1362 (64%), Gaps = 53/1362 (4%) Strand=Plus/Plus Query 75701 AGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTA 75760 || ||||||||||| || | ||| || ||| ||| ||||||| |||||||||| Sbjct 1115291 AGCAGATGAGGATTTACCACGAAAAACTCACCACTCAACACTCTTCTGTAGTAAATATTA 1115350 Query 75761 CTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGC 75820 || || || ||||| | ||||||||||| || | ||| |||| ||| ||| || ||| Sbjct 1115351 CTAGTGTAAGGTTCAAACGATTCATTGTTGCCAAGAATCTGAGAAGTACTAGCCGTGGGC 1115410 Query 75821 ATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATAT 75880 || ||||| | ||||| |||||| || |||||| | || | | |||| || | Sbjct 1115411 ATTGGTGCAATGAATAAGGAATTTCTTAGCCCATGTTCACGGAGATCAGCTTTAAGTTTA 1115470 Query 75881 TTCCAATCCCAAAGATCTGATGGTACAACAT-----CCCAGAGATCGTATTGTAGAATTC 75935 | ||| ||||| || | || | || | | |||| || || |||||| | | Sbjct 1115471 TCCCAGTCCCAGAG--CGAATTATCCACCTTAGCTCCCCAAAGGTCAAATTGTAATAAAC 1115528 Query 75936 CGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCC--GT--CCTTTTCAGCTAGT 75991 | ||| || |||||| | ||||||||| ||||| || || |||| || || Sbjct 1115529 CCTTGGAGGCCGGTGATCCTTCATATGTTTCATAAGTACCCAGTTGCCTT----GCCAGA 1115584 Query 75992 TCGCAACTCGCCT-CTAAC--GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGA 76048 || |||| | | ||| ||| || || |||||||| ||||| |||||||| Sbjct 1115585 TCAATACTCTCAGACAAACATGCA---TAGTACATTGTTTCAAAAATGCGTTTATTAAGT 1115641 Query 76049 TCTTGCGCTTCAA--GACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTC 76106 ||| | || || |||| | || || || | | || || || | ||||||||| | Sbjct 1115642 TCTCGAGCCTCGTCTGACT--CGAACGGGTACCGCATTAGCATGAAGGTATCTGCTAGGC 1115699 Query 76107 CCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAG 76166 | || || |||| ||| || ||||||||||| ||| |||| |||| | | || Sbjct 1115700 CTTGTACCCCAACACCCATCGGTCTATGTCTGAAATTAGAAACCCTGGCTTGTTTCACAG 1115759 Query 76167 GGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACG---- 76222 |||| ||||| | || || | |||||| || || | || | || || | Sbjct 1115760 GGTAGTAATTCCTGTCAATTACTTTATTAAGGTT----ATAAGTGATTACACGGCAGATT 1115815 Query 76223 TCCTTTAGTTTGAGAAAATCAAATTTTCCA-TCTA-----TCACAAACATATTAAGAGCT 76276 || | ||||| ||||| ||| | | ||| | |||||| | || ||| Sbjct 1115816 TCATAGAGTTTTTTGAAATCGAATGTCCGTGTCTGCGTGTTAACAAACTTTGGCAGCGCT 1115875 Query 76277 ATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTG 76336 | || |||| |||||| || || ||||| | || | |||| | || || | Sbjct 1115876 ACTGAAGCTAAATTACACACTGCAACCTCGTCCTTGTTTGTGAATTGGACGATTTCACAG 1115935 Query 76337 CATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAG 76396 || || ||||| | || ||||| || | ||| || ||||| ||||| |||||||| | Sbjct 1115936 CAGAGGTTACTGGATTTAATAGTGCCCAAATTCTGCTGGTTACTCTTAGCGTTACATGCG 1115995 Query 76397 TCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAG 76456 ||||| || | | ||||||| ||||| || || || || | || ||| | ||| Sbjct 1115996 TCCTTGTATAACATGTACGGAGTGCCAGTCTCGATTTGGGACTGGAGAATTGCAAACCAC 1116055 Query 76457 ACGACT-CTAG-CTTTTATTATAGATTTGT----ATCGCTTCTCTCTTTCATATTGTGTA 76510 | ||| || | || ||| | || || | | || || ||||| || ||| Sbjct 1116056 A--ACTTCTGGGCTGGGATTGTCT-TTCGTCCCAAGCCCTGCTGC---TCATACTGAGTA 1116109 Query 76511 TATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACAC 76570 || || |||||||| || ||||||||||| || | || ||| ||| |||| |||||| Sbjct 1116110 TACAAACGTTCAAACTCGTCTCCCCAAACCTCGTGCAGACCTCTACACTCATCTGGACAC 1116169 Query 76571 ATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGA 76630 |||| || ||| | || | ||| ||| |||||||| || || || || ||||| || Sbjct 1116170 ATCAGTGTCCAATTCTTATTTGCCTCAACTCGTTTCATGAACAGGTCTGGGATCCACAGC 1116229 Query 76631 GCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGG 76690 || |||| ||| | | | | ||||| || || || | ||||||| Sbjct 1116230 GCGTAGAATAAATCCCTTGCACGCTGGTCTTCTGCGCCGTGGTTTTTCCTGAGATCTAAC 1116289 Query 76691 AACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGT-CGTTT 76749 |||| | |||||| | |||||| || || |||||||||| || | | || | ||||| Sbjct 1116290 AACTTGAAAATATCCGCATGCCAAGGCTCCAGATATATCG-CAAATGAGCCTTTACGTTT 1116348 Query 76750 ATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAAT 76809 ||| || || || | || |||| || ||| | | ||| ||| || | || Sbjct 1116349 TCCACCACCTTGGTCCACGTACTTGGCCGTCGCGTTAAATATCTTCAGCATGGGCACGAT 1116408 Query 76810 GCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAAT 76869 ||||| || | || || || || ||| || ||| | || | || || ||| Sbjct 1116409 CCCGTTGGAAATGCCGTTGGTGCCCCTAATGTATGATCCGCTGGCTCTGATTTTGTGAAT 1116468 Query 76870 AGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATA 76929 | || || ||||| || || |||| || | ||| || | |||| |||| | | Sbjct 1116469 TGCAAGTCCGATTCCACCGGCTGATTTACTTATAAAAGCGCACTGGCTCAAGGTGTTAAA 1116528 Query 76930 GATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATG 76989 || || | | ||| || ||||| ||| || || || ||||||||| | || Sbjct 1116529 AATCCCAGCCAGGGAATCGTCTTGCATGTCAAGTAGGAAGCAAGAGGACATTTGAGGGTG 1116588 Query 76990 AACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAA 77031 ||||| || |||||||| || || | ||| || ||||| Sbjct 1116589 CCTGGTTCCCGCGTTAAACAAAGTCGGCGTTGCGTGTGTGAA 1116630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934319794880