Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1 131 4e-25 seq2 89.7 1e-12 >seq1 Length=2540030 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||||| | ||||| | ||| | || ||||| |||||||||||||||||| Sbjct 2214229 CCACCACGCAACCTCAGTACTAAATGAAGGGTACTTTCCTTTTGGATGTTGTAGTCACTC 2214288 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || | |||||||||| || || || ||||| ||||| | |||||||| || Sbjct 2214289 AAAGTCCTACCATCCTCTAACTGCTTACCAGCAAATATCAACCTCTGTTGGTCTGGAGGG 2214348 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||| ||||| ||||| || || || | || || ||||| || || || Sbjct 2214349 ATGCCTTCCTTATCTTGAATCTTAGCCTTAACATTCTCTATCGTGTCGCTAGGCTCAACC 2214408 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| || || || || || || ||||| || |||||||| ||||| || Sbjct 2214409 TCGAGGGTTATAGTTTTTCCTGTTAAAGTTTTGACGAATATTTGCATCTT 2214458 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 282887 AAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATC 282946 ||| || | ||||| ||||| || || ||||| ||||||||| || || | ||||| Sbjct 1523578 AAGCACTAAATGTAGGGTGCTCTCCTTCTGGATATTGTAGTCACTGAGTGTTCTACCATC 1523637 Query 282947 CTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTC 283006 |||||| || || || ||||| ||||| | |||||||| ||||| || ||||| || Sbjct 1523638 CTCTAGCTGCTTACCAGCAAATATCAACCTCTGTTGGTCTGGAGGAATTCCTTCCTTATC 1523697 Query 283007 TTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGT 283066 || ||||| || || || | || || ||||| || || || ||||| || || || Sbjct 1523698 CTGAATCTTAGCCTTAACATTCTCTATCGTGTCGCTAGGCTCAACCTCGAGGGTTATAGT 1523757 Query 283067 CTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || || ||||| || |||||||||||||| || Sbjct 1523758 TTTTCCTGTTAAAGTTTTGACGAATATCTGCATATT 1523793 Score = 111 bits (122), Expect = 3e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| || | ||||||||| || ||||||||||||||| | || | ||||||||| Sbjct 1523354 ACCAAGTGAAGCGTGCTTTCCTTCTGGATGTTGTAGTCACTCAAAGTCCTACCATCCTCT 1523413 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 | || || || ||||| ||||| | |||||||| ||||| || ||||| || || Sbjct 1523414 AACTGCTTACCAGCAAATATCAACCTCTGTTGGTCTGGAGGAATTCCTTCCTTATCCTGA 1523473 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||| || || || | || || ||||| || || || ||||| || || ||||| Sbjct 1523474 ATCTTAGCCTTAACATTCTCTATCGTGTCGCTAGGCTCAACCTCGAGGGTTATAGTCTTG 1523533 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || | || ||||| || || ||||| Sbjct 1523534 CCAGTGAGGGTTTTAACAAAAATTTGCAT 1523562 >seq2 Length=1971884 Score = 89.7 bits (98), Expect = 1e-12 Identities = 200/298 (67%), Gaps = 2/298 (1%) Strand=Plus/Plus Query 273773 CAGTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACC 273832 ||| |||||||| ||||| | || || ||| || ||||| | ||| ||| Sbjct 930308 CAGCTTCGTGAATATGTAACGTGCTGCTGCTGCGTCTTTACCACCCTCTTTCCTGCTACC 930367 Query 273833 AAACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCAT 273892 |||||| || || || || ||| |||||||| || || | ||||| ||||| Sbjct 930368 AAACTGTCCACATGGAAGGAGTAGGTTAATGTTGTTTGAGCCTACAAAGTCCTGTGCCAT 930427 Query 273893 ATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGAT 273952 || || || ||| || | || || ||||||||||| || ||| || || || Sbjct 930428 GTTTACAATTGTCTGTTGTAACGAGTTTTCACCGTGGTGATAAGCTGAGTGCTCAGCAAT 930487 Query 273953 ATAACCACTGAACTGAGCAACCTT-CACATCGCTCGTCAAGTTTCGCTTGAATGCGGAAT 274011 || ||| | | || || ||||| ||| ||| || ||||||| ||||| || | | Sbjct 930488 GTATCCAGTAAGTTGTGCTACCTTACAC-TCGTTCTTCAAGTTACGCTTAAAACAGCCAA 930546 Query 274012 ACAACACCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGGAATACTGCGTTC 274069 |||| ||||| ||||| ||||||||||| |||| || ||||| || || || || Sbjct 930547 ACAAAACCTTACGCTGTCCCGGCTTGAACCCGTCAATCACTGATGGTATGCTACGCTC 930604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046739079297886