Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1 116 3e-21 >seq1 Length=2540030 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || ||||| || ||||| |||| |||||||||||| ||||| ||||||||||| || Sbjct 1523336 CCTCCTCTGAGCCTCAAAACCAAGTGAAGCGTGCTTTCCTTCTGGATGTTGTAGTCACTC 1523395 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 | | | || || | |||||| || ||||| ||||| | ||| || |||| ||| Sbjct 1523396 AAAGTCCTACCATCCTCTAACTGCTTACCAGCAAATATCAACCTCTGTTGGTCTGGAGGA 1523455 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | |||||||| ||| ||||| || | || ||| |||| |||||| | || || Sbjct 1523456 ATTCCTTCCTTATCCTGAATCTT-AGCCTTAACATTCTCTATCGTGTCGCTAGGCTCAAC 1523514 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| | || || ||||| || |||||||| || || || |||||||| Sbjct 1523515 CTCGAGGGTTATAGTCTTGCCAGTGAGGGTTTTAACAAAAATTTGCAT 1523562 Score = 105 bits (116), Expect = 5e-18 Identities = 166/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||| ||||| | ||| | || || ||||||||||| ||||| ||||| Sbjct 1523557 TTGCATACCTCCTCTGAGTCTAAGCACTAAATGTAGGGTGCTCTCCTTCTGGATATTGTA 1523616 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || |||| | | || || |||||||| || ||||| ||||| | ||| || || Sbjct 1523617 GTCACTGAGTGTTCTACCATCCTCTAGCTGCTTACCAGCAAATATCAACCTCTGTTGGTC 1523676 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 || ||| | |||||||| ||| ||||| || | || ||| |||| |||||| | Sbjct 1523677 TGGAGGAATTCCTTCCTTATCCTGAATCTT-AGCCTTAACATTCTCTATCGTGTCGCTAG 1523735 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| | || || || ||||| || | || || ||||| || ||||| Sbjct 1523736 GCTCAACCTCGAGGGTTATAGTTTTTCCTGTTAAAGTTTTGACGAATATCTGCAT 1523790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990360513553