Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Theileria_20parva_20[genbank_20GCA_5F000165365.1_202005-06-30] 9 sequences; 8,347,606 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1 118 3e-21 >seq1 Length=2540030 Score = 118 bits (130), Expect = 3e-21 Identities = 160/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 |||||||| || ||||| ||||| || || || || ||||||||||| || || || Sbjct 1523559 CAAATTTTTGTTAAAACCCTCACTGGCAAGACTATAACCCTCGAGGTTGA--GCCTAGCG 1523502 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || ||||| || || ||||||||||| || |||||||| ||||| ||||| | Sbjct 1523501 ACACGATAGAGAATGTTAAGGCTAAGATTCAGGATAAGGAAGGAATTCCTCCAGACCAAC 1523442 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | || || || || || ||| | || ||||| |||||| | || || ||| Sbjct 1523441 AGAGGTTGATATTTGCTGGTAAGCAGTTAGAGGATGGTAGGACTTTGAGTGACTACAACA 1523382 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || ||| || || || | |||||||| |||||| Sbjct 1523381 TCCAGAAGGAAAGCACGCTTCACTTGGTTTTGAGGCTCAGA 1523341 Score = 114 bits (126), Expect = 3e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 ||||| ||||| |||||| | ||||||||||| || ||||||||||| | ||| | | Sbjct 2214452 CAAATATTCGTCAAAACTTTAACAGGAAAAACTATAACCCTCGAGGTTG--AGCCTAGCG 2214395 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || ||||| || || |||||||| || || ||||| |||||||| ||||| | Sbjct 2214394 ACACGATAGAGAATGTTAAGGCTAAGATTCAAGATAAGGAAGGCATCCCTCCAGACCAAC 2214335 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | || || || || || ||| | || ||||| |||||| | || || ||| Sbjct 2214334 AGAGGTTGATATTTGCTGGTAAGCAGTTAGAGGATGGTAGGACTTTGAGTGACTACAACA 2214275 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAG 178135 ||||||| ||| || || ||| | || |||| Sbjct 2214274 TCCAAAAGGAAAGTACCCTTCATTTAGTACTGAG 2214241 Score = 109 bits (120), Expect = 1e-18 Identities = 158/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| |||||| | ||||||||||| || ||||||||||| || || || Sbjct 1523787 CAGATATTCGTCAAAACTTTAACAGGAAAAACTATAACCCTCGAGGTTGA--GCCTAGCG 1523730 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || ||||| || || ||||||||||| || |||||||| ||||| ||||| | Sbjct 1523729 ACACGATAGAGAATGTTAAGGCTAAGATTCAGGATAAGGAAGGAATTCCTCCAGACCAAC 1523670 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | || || || || || ||||| || ||||| || || || || || || Sbjct 1523669 AGAGGTTGATATTTGCTGGTAAGCAGCTAGAGGATGGTAGAACACTCAGTGACTACAATA 1523610 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||| | || | ||||||||| Sbjct 1523609 TCCAGAAGGAGAGCACCCTACATTTAGTGCTTAGACTCAGA 1523569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203731061194746