Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1346 105 5e-18 seq687 100 2e-16 seq1348 98.7 8e-16 seq1347 98.7 8e-16 >seq1346 Length=13467 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || |||||||||||||||||||||| ||| || |||| Sbjct 13309 AAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTTCGGCCGTCC 13250 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| || || || || || |||| ||||| || || || || | ||| ||||||||| Sbjct 13249 TCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCC 13190 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || ||| ||| || | | | | |||| ||| || || | || || ||| Sbjct 13189 TGGATCTTTGCCTTCACGTTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATGGTC 13130 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || || || ||||||||||||||||| ||||| ||| Sbjct 13129 TTCCCGGTAAGAGTCTTCACAAAGATCTGCATTTTG 13094 >seq687 Length=105670 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| |||||||| |||||||||||| || | |||| || Sbjct 92672 ACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTCG 92613 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| |||| ||||| ||||| || || | |||||||| ||| | Sbjct 92612 AGCTGCTTGCCTGCGAAAATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTGA 92553 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||| || |||| || ||||||||| Sbjct 92552 ATCTTGGCCTTGACATTTTCGATGGTGTCGGAAGGCTCGACGTCCAAAGTGATCGTCTTG 92493 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCC 45342 || || || |||||||| || || ||||| ||||| Sbjct 92492 CCGGTGAGCGTCTTCACGAAAATCTGCATTTTGCC 92458 >seq1348 Length=13918 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || |||||||||||||||||||||| ||| || |||| Sbjct 286 AAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTTCGGCCGTCC 227 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| || || || || || |||| ||||| || || || || | ||| ||||||||| Sbjct 226 TCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCC 167 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || ||| ||| || | | | | | || ||| || || | || || ||| Sbjct 166 TGGATCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAACATCAAGCGTGATGGTC 107 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||||||||||||||| ||||| Sbjct 106 TTCCCAGTAAGAGTCTTCACAAAGATCTGCAT 75 >seq1347 Length=520 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || |||||||||||||||||||||| ||| || |||| Sbjct 213 AAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTTCGGCCGTCC 154 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| || || || || || |||| ||||| || || || || | ||| ||||||||| Sbjct 153 TCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCC 94 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || ||| ||| || | | | | | || ||| || || | || || ||| Sbjct 93 TGGATCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAACATCAAGCGTGATGGTC 34 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||||||||||||||| ||||| Sbjct 33 TTCCCGGTAAGAGTCTTCACAAAGATCTGCAT 2 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || |||||||||||||||||||||| ||| || |||| Sbjct 441 AAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTTCGGCCGTCC 382 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 |||| || || || || || |||| ||||| || || || || | ||| ||||||||| Sbjct 381 TCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCC 322 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || ||| ||| || | | | | | || ||| || || | || || ||| Sbjct 321 TGGATCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAACATCAAGCGTGATGGTC 262 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||||||||||||||| ||||| Sbjct 261 TTCCCGGTAAGAGTCTTCACAAAGATCTGCAT 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395047672765057