Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2236 156 4e-33 seq1346 116 3e-21 seq687 116 3e-21 seq1348 111 1e-19 seq1347 111 1e-19 seq2856 84.2 2e-11 >seq2236 Length=21742 Score = 156 bits (172), Expect = 4e-33 Identities = 329/492 (67%), Gaps = 5/492 (1%) Strand=Plus/Plus Query 22727 GCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTG 22786 ||||| ||||||||||| ||||| | ||| | | || ||| ||||||||| || || Sbjct 11756 GCGGCGAGTTCGCAGCTGGCCTCGAGAGCGGCAAAGTAGATACACTCGAAGATGTTTCTG 11815 Query 22787 TTCAATTCGGCGGCGGCGACGCTTTCGTACGGCATA-CGCATCATCACGAACGCGTCCGC 22845 ||||| || || || ||| ||| |||| ||| || | | || ||| ||||| || Sbjct 11816 TTCAAGACGCGAGCTTCGGGGCTGTCGAACGG-ATAGCGAAGAAGCATGAAGGCGTCTGC 11874 Query 22846 CATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGG 22905 | ||| || || || | ||||| ||||||| || || | || || || || Sbjct 11875 GAGACCTTGGACTCCCAAACCGACAGGTCGGTGCCGCAAGTTGCTCTTCTTCGCTTCTGG 11934 Query 22906 CAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTAT 22965 | || || | || |||||| | |||||||||||| |||| | ||| || Sbjct 11935 GACTGGGTAGTAGTTTCGATCGATCACGCGGTTCAAGTTTCTCGTCATGACTTTGACGAT 11994 Query 22966 NNNNNNNNNNNNNTCAAAGTCGTAAAC---GCCCGATTGTACAACAAACTTGTTGACGGC 23022 || ||||| || || | | | || |||||| | | Sbjct 11995 TCGCTTCAAGTGTTCGTAGTCGAAAGTTCGGCTCTCGCGGTCCACGAACTTGGGCAGCGA 12054 Query 23023 GATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGT 23082 || ||||| | ||||| || ||||||||||||||| ||| || || || | ||| || Sbjct 12055 GACGGAGGCCAAGTTGCAGACAGCCACCTCGTCTTTGCTCGTATATTCGACGACTTCTGT 12114 Query 23083 ACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGA 23142 || | ||||| ||||| ||||| ||||| || |||||||||| || |||||||| | Sbjct 12115 GCACAAGTTGCTGCACTTGATCGTTCCCAAGTTCTTCTGGTTGCTCTTCCGATTGCATGC 12174 Query 23143 ATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCA 23202 || ||||| |||||||||||||| |||||||||| ||||| || || ||||| ||| Sbjct 12175 GTCTTTGTACAGCATGTACGGCGTCCCCGTCTCGATCTGCGCCTGGAGAATCGCAAACCA 12234 Query 23203 CATAGTCTGAGC 23214 | | |||||| Sbjct 12235 AAGATGCTGAGC 12246 >seq1346 Length=13467 Score = 116 bits (128), Expect = 3e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || || || |||||||| || || || || ||||| | || ||||| ||| Sbjct 13095 AAAATGCAGATCTTTGTGAAGACTCTTACCGGGAAGACCATCACGCTTGATGTTGAGCCG 13154 Query 31250 TCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| |||| | || || || ||| | |||||||||||| | || || || Sbjct 13155 TCAGACACCATCGAGAACGTGAAGGCAAAGA-TCCAGGACAAGGAAGGTATTCCCCCTGA 13213 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||||||||| || || |||||||| |||||||| ||| ||| || ||| || Sbjct 13214 TCAGCAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCCGACTA 13273 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 |||||||| || || |||||||| || |||| Sbjct 13274 CAACATTCAGAAGGAGTCGACTCTCCACTTGGT 13306 >seq687 Length=105670 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || ||||| |||||||| | ||||| || || Sbjct 92461 AAAATGCAGATTTTCGTGAAGACGCTCACCGGCAAGACGATCACTTTGGACGTCGAGCCT 92520 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||||| ||||| | || ||| ||||| || | ||||| ||| Sbjct 92521 TCCGACACCATCGAAAATGTCAAGGCCAAGATTCAGGATAAGGAGGGAATTCCGCCTGAC 92580 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || ||||| ||||| ||| | || ||| | || | ||| || Sbjct 92581 CAGCAGCGTCTGATTTTCGCAGGCAAGCAGCTCGAGGACGGCAGAACCCTTTCCGACTAC 92640 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| || || ||||| ||||| || |||| Sbjct 92641 AACATCCAGAAGGAATCCACTCTCCACTTGGT 92672 >seq1348 Length=13918 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||| || || || || ||||| | || ||||| ||||| Sbjct 75 ATGCAGATCTTTGTGAAGACTCTTACTGGGAAGACCATCACGCTTGATGTTGAGCCGTCA 134 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||| | || || || ||| | |||||||||||| | || || || || Sbjct 135 GATACCATCGAGAACGTGAAGGCAAAGA-TCCAGGACAAGGAAGGTATTCCCCCTGATCA 193 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || |||||||| |||||||| ||| ||| || ||| || || Sbjct 194 GCAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCCGACTACAA 253 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 |||||| || || |||||||| || |||| Sbjct 254 CATTCAGAAGGAGTCGACTCTCCACTTGGT 283 >seq1347 Length=520 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||| || || || || ||||| | || ||||| ||||| Sbjct 2 ATGCAGATCTTTGTGAAGACTCTTACCGGGAAGACCATCACGCTTGATGTTGAGCCGTCA 61 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||| | || || || ||| | |||||||||||| | || || || || Sbjct 62 GATACCATCGAGAACGTGAAGGCAAAGA-TCCAGGACAAGGAAGGTATTCCCCCTGATCA 120 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || |||||||| |||||||| ||| ||| || ||| || || Sbjct 121 GCAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCCGACTACAA 180 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 |||||| || || |||||||| || |||| Sbjct 181 CATTCAGAAGGAGTCGACTCTCCACTTGGT 210 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||| || || || || ||||| | || ||||| ||||| Sbjct 230 ATGCAGATCTTTGTGAAGACTCTTACCGGGAAGACCATCACGCTTGATGTTGAGCCGTCA 289 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||| | || || || ||| | |||||||||||| | || || || || Sbjct 290 GATACCATCGAGAACGTGAAGGCAAAGA-TCCAGGACAAGGAAGGTATTCCCCCTGATCA 348 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || |||||||| |||||||| ||| ||| || ||| || || Sbjct 349 GCAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCCGACTACAA 408 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 |||||| || || |||||||| || |||| Sbjct 409 CATTCAGAAGGAGTCGACTCTCCACTTGGT 438 >seq2856 Length=43924 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 57993 GTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGG 58051 || ||||| || ||||| || ||||| |||| | || || ||| ||||||| || || Sbjct 22072 GTGGAAGGCATTCTCTTTAGTGGAAGCTTCTGCG-CTATTTTCTGGCTGAAGAAGCGTGG 22014 Query 58052 CCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATAC 58111 | ||||||| ||||| || || ||||||||||| || |||||||| || || ||| | Sbjct 22013 CTTGATGCCGGGCCTCACTTTCTCAAACGAGTTGATTTCTCGCGACGAAGGACTGCATGC 21954 Query 58112 TGATTTTGCGTGCCT 58126 || ||||| || || Sbjct 21953 AGACTTTGCCTGTCT 21939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445734544418640