Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1347 98.7 8e-16 seq1346 95.1 1e-14 seq1348 89.7 4e-13 seq687 82.4 6e-11 >seq1347 Length=520 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 |||||||| | | || || || || || || |||||| ||||||||||| || | | Sbjct 228 CCTCCGCGAAGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAC 169 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | ||| ||||||||| |||||| || | |||| | |||||||||||| || Sbjct 168 AGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGA 109 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | || |||||||||| || || ||| | | | |||||||| | | ||| Sbjct 108 ATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAACA 49 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || ||||| ||||| |||||||| |||||||| Sbjct 48 TCAAGCGTGATGGTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCAT 2 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 |||||||| | | || || || || || || |||||| ||||||||||| || | | Sbjct 456 CCTCCGCGAAGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAC 397 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | ||| ||||||||| |||||| || | |||| | |||||||||||| || Sbjct 396 AGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGA 337 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | || |||||||||| || || ||| | | | |||||||| | | ||| Sbjct 336 ATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAACA 277 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || ||||| ||||| |||||||| |||||||| Sbjct 276 TCAAGCGTGATGGTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCAT 230 >seq1346 Length=13467 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 |||||||| | | || || || || || || |||||| ||||||||||| || | | Sbjct 13324 CCTCCGCGAAGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAC 13265 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | ||| ||||||||| |||||| || | |||| | |||||||||||| || Sbjct 13264 AGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGA 13205 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | || |||||||||| || || ||| | | | ||||| || | | ||| Sbjct 13204 ATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTGTCTGACGGCTCAACA 13145 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || ||||| ||||| |||||||| |||||||| Sbjct 13144 TCAAGCGTGATGGTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCAT 13098 >seq1348 Length=13918 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| ||||||||||| || | || ||| ||||||||| |||||| || | | Sbjct 266 CTCCTTCTGAATGTTGTAGTCGGACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAA 207 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||| | |||||||||||| || | || |||||||||| || || ||| | Sbjct 206 AATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTT 147 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | |||||||| | | ||| || | || ||||| || || || ||||| ||||| Sbjct 146 CTCGATGGTATCTGACGGCTCAACATCAAGCGTGATGGTCTTCCCAGTAAGAGTCTTCAC 87 Query 48715 AAAAATCTGCAT 48726 ||| |||||||| Sbjct 86 AAAGATCTGCAT 75 >seq687 Length=105670 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || || ||| ||||| || |||||||| || | | || ||||||| Sbjct 92673 CACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTC 92614 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| || || |||| | ||||||||| || ||| | | ||||| ||| Sbjct 92613 GAGCTGCTTGCCTGCGAAAATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTG 92554 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| || ||||| | | ||||| |||| || ||| || | || || || || Sbjct 92553 AATCTTGGCCTTGACATTTTCGATGGTGTCGGAAGGCTCGACGTCCAAAGTGATCGTCTT 92494 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||| || ||||| ||||||||||| Sbjct 92493 GCCGGTGAGCGTCTTCACGAAAATCTGCAT 92464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421221848927717