Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2236 82.4 1e-10 >seq2236 Length=21742 Score = 82.4 bits (90), Expect = 1e-10 Identities = 219/332 (66%), Gaps = 2/332 (1%) Strand=Plus/Plus Query 63055 CTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAG 63114 ||| |||| || ||||| |||| ||| |||||||| || ||||| || || || || Sbjct 12753 CTCACCGTTGTCGTTCACACGTTCCATGAAGAGATCTGGGATCCAGAGGGCGCAGAAGAG 12812 Query 63115 ATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 63174 || | | | | || || || || ||||| || | |||||||| | | || Sbjct 12813 GTCGCGCGCCCGTCGCTCTTCCTTGCCATGGTTCTTCTTGATGTCGAGGAAATCAAAAAC 12872 Query 63175 ATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTG 63234 |||| | ||||| ||||||||||| ||||| | || |||||| || ||||| Sbjct 12873 ATCAAAGTGCCAAGGTTCCAAGTAAATGGCGAGGCTGCCTTTGCGTTTGCCGCCGCCCTG 12932 Query 63235 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGT 63294 || | ||| | |||| || || | ||||| | ||| || | || ||||| || || Sbjct 12933 GTCGACGTAGCGCGCGGCGTCGTTGAAGACTCTGAGCATCGGCAGAAGGCCATTCGA-GT 12991 Query 63295 A-CCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTA 63353 | ||||| || ||| ||| ||||| |||| ||||| | | | | ||||| | Sbjct 12992 AGCCATTCGTTCCTCGGATGTAGCTGTTTGTGGCTCGAATGTCTGTCACGGCGAGACCGA 13051 Query 63354 TTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63385 ||||| || | || || || || |||||| Sbjct 13052 GGCCCCCAGCTGTCTTGGAAATCAACGCGCAT 13083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633586719073200