Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1347 134 1e-26 seq1346 131 1e-25 seq1348 123 2e-23 seq2236 95.1 1e-14 >seq1347 Length=520 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | ||||| || || |||| ||||| || || | | Sbjct 2 ATGCAGATCTTTGTGAAGACTCTTACCGGGAAGACCATCACGCTTGATGTTGAGCCGTCA 61 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || ||| || || |||||||| |||||||| || ||||| Sbjct 62 GATACCATCGAGAACGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCAG 121 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| ||||| ||||| ||| || | ||||| |||||| Sbjct 122 CAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCCGACTACAAC 181 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || | || || |||||||| | |||||||| Sbjct 182 ATTCAGAAGGAGTCGACTCTCCACTTGGTTTTGCGTCTTCGCGGAGG 228 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | ||||| || || |||| ||||| || || | | Sbjct 230 ATGCAGATCTTTGTGAAGACTCTTACCGGGAAGACCATCACGCTTGATGTTGAGCCGTCA 289 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || ||| || || |||||||| |||||||| || ||||| Sbjct 290 GATACCATCGAGAACGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCAG 349 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| ||||| ||||| ||| || | ||||| |||||| Sbjct 350 CAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCCGACTACAAC 409 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || | || || |||||||| | |||||||| Sbjct 410 ATTCAGAAGGAGTCGACTCTCCACTTGGTTTTGCGTCTTCGCGGAGG 456 >seq1346 Length=13467 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || ||||| || ||| | ||||| || || |||| ||||| || || | Sbjct 13095 AAAATGCAGATCTTTGTGAAGACTCTTACCGGGAAGACCATCACGCTTGATGTTGAGCCG 13154 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || | | || ||| || || |||||||| |||||||| || ||| Sbjct 13155 TCAGACACCATCGAGAACGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGAT 13214 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || ||||| ||||| ||||| ||||| ||| || | ||||| ||| Sbjct 13215 CAGCAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCCGACTAC 13274 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||||| || || || || | || || |||||||| | |||||||| Sbjct 13275 AACATTCAGAAGGAGTCGACTCTCCACTTGGTTTTGCGTCTTCGCGGAGG 13324 >seq1348 Length=13918 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | || || || || |||| ||||| || || | | Sbjct 75 ATGCAGATCTTTGTGAAGACTCTTACTGGGAAGACCATCACGCTTGATGTTGAGCCGTCA 134 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || ||| || || |||||||| |||||||| || ||||| Sbjct 135 GATACCATCGAGAACGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCAG 194 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| ||||| ||||| ||| || | ||||| |||||| Sbjct 195 CAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCCGACTACAAC 254 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || || | || || |||||||| | || || ||| Sbjct 255 ATTCAGAAGGAGTCGACTCTCCACTTGGTTTTGCGTCTTCGTGGTGGT 302 >seq2236 Length=21742 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 129700 GAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCGCAC 129759 |||||||| |||||||| || |||| |||| | || ||||| | ||| | |||| Sbjct 12059 GAGGCCAAGTTGCAGACAGCCACCTCGTCTTTGCTCGTATATTCGACGACTTCTGTGCAC 12118 Query 129760 AAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCT 129819 || || || || || || ||||| | ||| || || || ||| ||||| || ||| Sbjct 12119 AAGTTGCTGCACTTGATCGTTCCCAAGTTCTTCTGGTTGCTCTTCCGATTGCATGCGTCT 12178 Query 129820 TTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCG 129856 ||||||| |||||||||||| ||||| |||| |||| Sbjct 12179 TTGTACAGCATGTACGGCGTCCCCGTCTCGATCTGCG 12215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419698755058105