Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1346 178 2e-39 seq1347 172 1e-37 seq687 161 2e-34 seq1348 159 6e-34 seq1602 109 1e-18 seq2736 84.2 4e-11 seq2704 84.2 4e-11 seq1264 84.2 4e-11 >seq1346 Length=13467 Score = 178 bits (196), Expect = 2e-39 Identities = 179/233 (77%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||||||||| ||||| |||||||| || || ||||| || || ||||| || |||| Sbjct 13326 TTCCTCCGCGAAGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGG 13267 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || | || || || |||||||| || || || || || | || || || || | Sbjct 13266 ACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGG 13207 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| ||||||||||| || ||||||||||| ||| |||||||||||||| | || | Sbjct 13206 GAATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTGTCTGACGGCTCAA 13147 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 | || | |||||||| || || || || ||||| || || ||||||||| || Sbjct 13146 CATCAAGCGTGATGGTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCATTTTG 13094 Score = 96.9 bits (106), Expect = 6e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || || | || || || || ||||| ||||||||||| || ||||||||| Sbjct 13465 CCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCC 13406 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || ||| ||||||||| |||| | || || || | |||||||| || || || || Sbjct 13405 TTCACGTTCTCGATGGTATCTGACGGCTCAACATCAAGCGTGATGGTCTTCCCGGTAAGA 13346 Query 68442 GTCTTGACGAATATCTGCATT 68462 ||||| || || ||||||||| Sbjct 13345 GTCTTCACAAAGATCTGCATT 13325 >seq1347 Length=520 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||||||||| ||||| |||||||| || || ||||| || || ||||| || |||| Sbjct 230 TTCCTCCGCGAAGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGG 171 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || | || || || |||||||| || || || || || | || || || || | Sbjct 170 ACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGG 111 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| ||||||||||| || ||||||||||| ||| ||||||||| |||| | || | Sbjct 110 GAATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAA 51 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || | |||||||| || || || || ||||| || || ||||||||| Sbjct 50 CATCAAGCGTGATGGTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCATT 1 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||||||||| ||||| |||||||| || || ||||| || || ||||| || |||| Sbjct 458 TTCCTCCGCGAAGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGG 399 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || | || || || |||||||| || || || || || | || || || || | Sbjct 398 ACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGG 339 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| ||||||||||| || ||||||||||| ||| ||||||||| |||| | || | Sbjct 338 GAATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAA 279 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || | |||||||| || || || || ||||| || || ||||||||| Sbjct 278 CATCAAGCGTGATGGTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCATT 229 >seq687 Length=105670 Score = 161 bits (178), Expect = 2e-34 Identities = 164/214 (77%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||||| || || |||||||| || ||||| || || || || || || Sbjct 92672 ACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTCG 92613 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || ||||| || || | || ||||| || ||||| || ||||| || ||| Sbjct 92612 AGCTGCTTGCCTGCGAAAATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTGA 92553 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| |||||||| ||||||||||| | | || || ||||| ||||| || || Sbjct 92552 ATCTTGGCCTTGACATTTTCGATGGTGTCGGAAGGCTCGACGTCCAAAGTGATCGTCTTG 92493 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATGC 68466 || ||||| ||||| ||||| ||||||||| ||| Sbjct 92492 CCGGTGAGCGTCTTCACGAAAATCTGCATTTTGC 92459 >seq1348 Length=13918 Score = 159 bits (176), Expect = 6e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| ||||| |||||||| || || ||||| || || ||||| || ||||| Sbjct 301 CCACCACGAAGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAC 242 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || |||||||| || || || || || | || || || || ||| Sbjct 241 AGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGA 182 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| || ||||||||||| ||| ||||||||| |||| | || || Sbjct 181 ATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAACA 122 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | |||||||| || || || || ||||| || || ||||||||| Sbjct 121 TCAAGCGTGATGGTCTTCCCAGTAAGAGTCTTCACAAAGATCTGCATT 74 >seq1602 Length=119199 Score = 109 bits (120), Expect = 1e-18 Identities = 103/129 (80%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 268367 GTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATG 268426 || ||||||| ||| |||||||| | ||| | | | ||||| |||||||||||||| || Sbjct 116211 GTAATTTTTCTGGTGACGAACGTTTTGCCTCTTCGTGGGCTTTCGTGGTTGAAGAGAATT 116270 Query 268427 CCGTTGCACGC-GAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAA 268485 || ||| |||| ||||||||| || ||| | ||||||||| ||||||||||| ||| | Sbjct 116271 CCATTG-ACGCAGAACATGCCGTAGCTCTCTCTGTAGTTCACAACCGTCCAGTACGCATA 116329 Query 268486 CATCTTTGC 268494 || ||| || Sbjct 116330 CAGCTTCGC 116338 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 14453 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 14398 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 15010 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 15065 >seq2736 Length=46442 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 30411 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 30466 >seq2704 Length=25443 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 18183 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 18238 >seq1264 Length=61654 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 6370 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 6425 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCC 84518 |||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 6521 TAGCTCAGTCGGTAGAGCGCGAGGCTCTTAACCTCGTGGTCGCGGGTTCGAGCCCC 6576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921556538559240