Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2236 127 4e-24 >seq2236 Length=21742 Score = 127 bits (140), Expect = 4e-24 Identities = 386/584 (66%), Gaps = 18/584 (3%) Strand=Plus/Plus Query 244382 CAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGG 244441 ||||| | ||||| ||||| ||||||| ||||||||| | |||||| | |||| Sbjct 11768 CAGCTGGCCTCGAGAGCGGCAAAGTAGATACACTCGAAGATGTTTCTGTTCAAGACGCGA 11827 Query 244442 GCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACG 244501 || | | || | ||| || || | | ||||||| |||| || || || || || Sbjct 11828 GCTTCGGGGCTGTCGAACGGATAGCGAAGAAGCATGAAGGCGTCTGCGAGACCTTGGACT 11887 Query 244502 CCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAG 244561 || | |||| |||| ||| ||| |||| | | ||||| || || ||||| || Sbjct 11888 CCCAAACCGACAGGTCGGTGCCGCAAGTTGCTCTTCTTCGCTTCTGGGACTGGGTAGTAG 11947 Query 244562 TTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGC 244621 || | |||||||| ||| | ||| | || || | ||||| ||| | || Sbjct 11948 TTTCGATCGATCACGCGGTTCAAGTTTCTCGTCATGACTTTGACGAT-TCG--CTTCAAG 12004 Query 244622 TGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCG 244681 || ||||| ||| | | ||||| | | | ||| || |||| | || | | Sbjct 12005 TGT---TCGTAGTCGAAAGT----TCGGCTCTCGCGGTCC--ACGAACTTGGGCAGCGAG 12055 Query 244682 ACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTG 244741 ||| ||||| ||||||||| |||||||| || | | || || | ||| | || ||| Sbjct 12056 ACGGAGGCCAAGTTGCAGACAGCCACCTCGTCTTTGCTCGTATATTCGACGACTTCTGTG 12115 Query 244742 CAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCG 244801 || | ||| ||||||||||| || |||| || || || ||| ||| ||||| ||| Sbjct 12116 CACAAGTTGCTGCACTTGATCGTTCCCAAGTTCTTCTGGTTGCTCTTCCGATTGCATGCG 12175 Query 244802 TCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA-CGCTGTTCCA 244860 || ||||| |||||| | ||| ||| ||||||| ||| || ||| | ||| ||| Sbjct 12176 TCTTTGTACAGCATGTACGGCGTCCCCGTCTCGATCTGCGCCTGGAGAATCGC-AAACCA 12234 Query 244861 GAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGC-CTCGTAGCGGGTGTACA 244919 || | | ||| | |||| | || |||| | ||| || |||||||| ||||| Sbjct 12235 AAGATGCTGAGCTGGAATCGTCTTCCG-GCCTCGACCTTCGCGTTCGTAGCGCTCGTACA 12293 Query 244920 GGGCCTCGAACTCGGGGCCCCAGACCT-CGTCTAGGCCGGGGCA 244962 | | ||| ||| |||||| |||| |||| | |||||||| Sbjct 12294 ACTCTTTGAATTCGTCGCCCCACACCTCCGTC-AAACCGGGGCA 12336 Score = 98.7 bits (108), Expect = 2e-15 Identities = 181/263 (69%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 244987 CTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAG 245046 ||| ||| ||| || || | | ||||||||| || |||||||||||||| |||||| Sbjct 12753 CTCACCGTTGTCGTTCACACGTTCCATGAAGAGATCTGGGATCCAGAGGGCGCAGAAGAG 12812 Query 245047 GTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGAC 245106 ||| | | || |||| ||| |||| ||||||| | | || | || ||||| || Sbjct 12813 GTCGCGCGCCCGTCGCTCTTCCTTGCCATGGTTCTTCTTGATGTCGAGGAAATCAAAAAC 12872 Query 245107 GTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTG 245166 || | |||||| || |||| ||| | |||||| ||| || ||| ||| ||||| Sbjct 12873 ATCAAAGTGCCAAGGTTCCAAGTAAATGGCGAGGCTGCCTTTGCGTTTGCCGCCGCCCTG 12932 Query 245167 GTCCACCATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGT 245225 ||| || | | || ||| ||||||||| | || | |||| | ||| || |||| Sbjct 12933 GTCGACGTAGCGCGCG-GCGTCGTTGAAGACTCTGAGCATCGGCAGAAGGCCATTCGAGT 12991 Query 245226 GGCCGTTGGTGCCCTTGATGTAG 245248 ||| || || || ||||||| Sbjct 12992 AGCCATTCGTTCCTCGGATGTAG 13014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944271715159920