Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1347 86.0 5e-12 seq1346 86.0 5e-12 >seq1347 Length=520 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || |||| |||| || || || |||||||||||||||||| || | | Sbjct 228 CCTCCGCGAAGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAC 169 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | ||| |||| ||||| |||||||| ||||| ||||| ||||||||||| || Sbjct 168 AGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGA 109 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCA 34079 | | || |||||| || ||| ||| | | ||| | |||| | | || Sbjct 108 ATACCTTCCTTGTCCTGGATCTTTGCCTTCA-CGTTCTCGATGGTATCTGACGGCTCAAC 50 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 || | ||| || || || ||||| || || ||||||||||| |||||| Sbjct 49 ATCAAGCGTGATGGTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCATT 1 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || |||| |||| || || || |||||||||||||||||| || | | Sbjct 456 CCTCCGCGAAGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAC 397 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | ||| |||| ||||| |||||||| ||||| ||||| ||||||||||| || Sbjct 396 AGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGA 337 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCA 34079 | | || |||||| || ||| ||| | | ||| | |||| | | || Sbjct 336 ATACCTTCCTTGTCCTGGATCTTTGCCTTCA-CGTTCTCGATGGTATCTGACGGCTCAAC 278 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 || | ||| || || || ||||| || || ||||||||||| |||||| Sbjct 277 ATCAAGCGTGATGGTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCATT 229 >seq1346 Length=13467 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || |||| |||| || || || |||||||||||||||||| || | | Sbjct 13324 CCTCCGCGAAGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAC 13265 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | ||| |||| ||||| |||||||| ||||| ||||| ||||||||||| || Sbjct 13264 AGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGA 13205 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCA 34079 | | || |||||| || ||| ||| | | ||| | | || | | || Sbjct 13204 ATACCTTCCTTGTCCTGGATCTTTGCCTTCA-CGTTCTCGATGGTGTCTGACGGCTCAAC 13146 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 || | ||| || || || ||||| || || ||||||||||| |||||||| Sbjct 13145 ATCAAGCGTGATGGTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCATTTT 13095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397034734305034