Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1347 131 4e-25 seq1346 127 5e-24 seq1348 125 2e-23 seq687 114 3e-20 seq12 91.5 3e-13 >seq1347 Length=520 Score = 131 bits (144), Expect = 4e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||||| || || || ||||| || || || || || || || Sbjct 192 TCCTTCTGAATGTTGTAGTCGGACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAA 133 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| ||| | || || ||||| || |||||||| || || |||||||| Sbjct 132 ATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTC 73 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || || || || |||||||| ||||||||||| |||||||| || Sbjct 72 TCGATGGTATCTGACGGCTCAACATCAAGCGTGATGGTCTTCCCGGTAAGAGTCTTCACA 13 Query 288463 AATATCTGCATT 288474 || ||||||||| Sbjct 12 AAGATCTGCATT 1 Score = 131 bits (144), Expect = 4e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||||| || || || ||||| || || || || || || || Sbjct 420 TCCTTCTGAATGTTGTAGTCGGACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAA 361 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| ||| | || || ||||| || |||||||| || || |||||||| Sbjct 360 ATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTC 301 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || || || || |||||||| ||||||||||| |||||||| || Sbjct 300 TCGATGGTATCTGACGGCTCAACATCAAGCGTGATGGTCTTCCCGGTAAGAGTCTTCACA 241 Query 288463 AATATCTGCATT 288474 || ||||||||| Sbjct 240 AAGATCTGCATT 229 >seq1346 Length=13467 Score = 127 bits (140), Expect = 5e-24 Identities = 145/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||||| || || || ||||| || || || || || || || Sbjct 13288 TCCTTCTGAATGTTGTAGTCGGACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAA 13229 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| ||| | || || ||||| || |||||||| || || |||||||| Sbjct 13228 ATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTC 13169 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || || |||||||| ||||||||||| |||||||| || Sbjct 13168 TCGATGGTGTCTGACGGCTCAACATCAAGCGTGATGGTCTTCCCGGTAAGAGTCTTCACA 13109 Query 288463 AATATCTGCATTATG 288477 || ||||||||| || Sbjct 13108 AAGATCTGCATTTTG 13094 Score = 105 bits (116), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || || || ||||||||||| ||| | || || ||||| || |||||||| || || Sbjct 13465 CCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCC 13406 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 |||||||| || || | ||| || || || || |||||||| ||||||||||| ||| Sbjct 13405 TTCACGTTCTCGATGGTATCTGACGGCTCAACATCAAGCGTGATGGTCTTCCCGGTAAGA 13346 Query 288454 GTCTTGACGAATATCTGCATT 288474 ||||| || || ||||||||| Sbjct 13345 GTCTTCACAAAGATCTGCATT 13325 >seq1348 Length=13918 Score = 125 bits (138), Expect = 2e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||||| || || || ||||| || || || || || || || Sbjct 265 TCCTTCTGAATGTTGTAGTCGGACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAA 206 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| ||| | || || ||||| || |||||||| || || |||||||| Sbjct 205 ATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTC 146 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| || || || || |||||||| |||||||| || |||||||| || Sbjct 145 TCGATGGTATCTGACGGCTCAACATCAAGCGTGATGGTCTTCCCAGTAAGAGTCTTCACA 86 Query 288463 AATATCTGCATT 288474 || ||||||||| Sbjct 85 AAGATCTGCATT 74 >seq687 Length=105670 Score = 114 bits (126), Expect = 3e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||||| || || | ||||| || | || || |||||||| Sbjct 92655 TTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTCGAGCTGCTTGCCTGCGAA 92596 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||||||||| || | || ||||| || |||||||| || || || || || || Sbjct 92595 AATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTGAATCTTGGCCTTGACATT 92536 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | ||| | || || || | ||||||||||| ||||| || ||||| || Sbjct 92535 TTCGATGGTGTCGGAAGGCTCGACGTCCAAAGTGATCGTCTTGCCGGTGAGCGTCTTCAC 92476 Query 288462 GAATATCTGCATTATG 288477 ||| ||||||||| || Sbjct 92475 GAAAATCTGCATTTTG 92460 >seq12 Length=19738 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 65513 CCGGTAGCATTCGAGGGCGCGCTGAAGCTCAAAGAGATTTCGTATATTCATGCGGAAGGT 65572 || ||||| |||||||||| |||||| |||| ||| | ||||| | || ||||||||| Sbjct 6015 CCCGTAGCTCTCGAGGGCGCTCTGAAGATCAAGGAGCTGGCGTATCTCCACGCGGAAGGT 5956 Query 65573 TTTCATGGTGGTGAGCTGAAGCATGGGCCTCTCGCTCTTATCGATGAGAA 65622 |||| || || | ||||||||||||||| | || | ||||| ||||| Sbjct 5955 TTTCCTGCGGGCGCGCTGAAGCATGGGCCGTTTGCGTTGATCGACGAGAA 5906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179567991421126