Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1348 113 4e-20 seq1346 113 4e-20 seq2236 107 2e-18 seq1347 107 2e-18 >seq1348 Length=13918 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||||||| || || | | |||||||| ||||||||||||||| | Sbjct 301 CCACCACGAAGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAC 242 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||| | || || || | | | || |||||||| || || || || Sbjct 241 AGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGA 182 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| ||| ||| || | | || | ||| || | || ||| || Sbjct 181 ATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAACA 122 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | || || ||||| ||||| || ||||| |||||||| Sbjct 121 TCAAGCGTGATGGTCTTCCCAGTAAGAGTCTTCACAAAGATCTGCAT 75 >seq1346 Length=13467 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||||||| || || | | |||||||| ||||||||||||||| | Sbjct 13324 CCTCCGCGAAGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAC 13265 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||| | || || || | | | || |||||||| || || || || Sbjct 13264 AGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGA 13205 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| ||| ||| || | | || | |||||| | || ||| || Sbjct 13204 ATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTGTCTGACGGCTCAACA 13145 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | || || || || ||||| || ||||| |||||||| Sbjct 13144 TCAAGCGTGATGGTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCAT 13098 >seq2236 Length=21742 Score = 107 bits (118), Expect = 2e-18 Identities = 402/618 (65%), Gaps = 28/618 (5%) Strand=Plus/Plus Query 153302 GGCCAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATT 153361 ||| ||||||||||| |||||||| ||| || |||| || ||| ||| | | | || Sbjct 11758 GGCGAGTTCGCAGCTGGCCTCGAGAGCGGCAAAGTAGATACACTCGAAGATGTTTCTGTT 11817 Query 153362 GAGAACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAG 153421 | ||| ||||| ||| ||| |||| ||| || |||| |||||||| || || Sbjct 11818 CAAGACGCGAGCTTCGGGGCTGTCGAACGGATAGCGAAGAAGCATGAAGGCGTCTGCGAG 11877 Query 153422 ACCCTGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCG-CTCGCTA 153480 ||| |||| || | |||| ||||| ||| | |||||| | |||| || | Sbjct 11878 ACCTTGGACTCCCAAACCGACAGGTCGGTGCCGCAAGTTGCTCTTCTTCGCTTCTGGGAC 11937 Query 153481 TGGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTAT-C 153539 |||| |||| || |||||||| | ||| | ||| | | || ||||| || | Sbjct 11938 TGGG-TAGTAGTTTCGATCGATCACGCGGTTCAAGTTTCTCGTCATGACTTTGACGATTC 11996 Query 153540 GCCTTAAGTTTCTCGAAATC-ATAGGTCATTTC-----GTCGACG--CGTACGCATCGAT 153591 || | |||| | ||| | || | || || || ||| ||| | | ||| ||| Sbjct 11997 GCTTCAAGTGT-TCGTAGTCGAAAGTTCGGCTCTCGCGGTCCACGAACTTGGGCAGCGAG 12055 Query 153592 TCACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCG-TCGCTGTACTGCACG 153650 |||| | |||| || ||||| ||| ||| || | ||| | || | ||| Sbjct 12056 --ACGG------AGGCCAAGTTGCAGACAGCCACCTCGTCTTTGCTCG-TATATTCGACG 12106 Query 153651 ATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGA 153710 | || | ||| | ||||||||| || || ||||| || | ||| ||||| || ||| Sbjct 12107 ACTTCTGTGCACAAGTTGCTGCACTTGATCGTTCCCAAGTTCTTCTGGTTGCTCTTCCGA 12166 Query 153711 TTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT- 153769 ||||| ||||||||| | ||||||||||| || ||||||| |||| | || || Sbjct 12167 TTGCATGCGTCTTTGTACAGCATGTACGGCGTCCCCGTCTCGATCTGCGCCTGGAGAATC 12226 Query 153770 --AAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTAT 153827 ||||| | || | ||| ||| | | | || ||| || || |||| ||||| Sbjct 12227 GCAAACCAA---AGATGCTGAGCTGGAATCGTCTTCCGGCCTCGACCTTCGCGTTCGTAG 12283 Query 153828 CGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGC 153887 |||||||||| | || |||||||| | || | | ||||| || | | Sbjct 12284 CGCTCGTACAACTCTTTGAATTCGTCGCCCCACACCTCCGTCAAACCGGGGCATTCGTTA 12343 Query 153888 GGACACATCAGCGACCAC 153905 || |||||||||| |||| Sbjct 12344 GGGCACATCAGCGTCCAC 12361 >seq1347 Length=520 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||||||| || || | | |||||||| ||||||||||||||| | Sbjct 228 CCTCCGCGAAGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAC 169 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||| | || || || | | | || |||||||| || || || || Sbjct 168 AGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGA 109 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| ||| ||| || | | || | ||| || | || ||| || Sbjct 108 ATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAACA 49 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | || || || || ||||| || ||||| |||||||| Sbjct 48 TCAAGCGTGATGGTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCAT 2 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||||||| || || | | |||||||| ||||||||||||||| | Sbjct 456 CCTCCGCGAAGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGAC 397 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||| | || || || | | | || |||||||| || || || || Sbjct 396 AGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGA 337 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| ||| ||| || | | || | ||| || | || ||| || Sbjct 336 ATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAACA 277 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | || || || || ||||| || ||||| |||||||| Sbjct 276 TCAAGCGTGATGGTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCAT 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496226935848240