Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq687 114 1e-20 seq2236 91.5 1e-13 seq1346 84.2 2e-11 >seq687 Length=105670 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || |||||||| ||||| || || ||| | |||| | || || | || Sbjct 92666 TGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTCGAGCTGC 92607 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || |||||| | |||| || |||||||| |||||||| || || ||||| ||||| || Sbjct 92606 TTGCCTGCGAAAATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTGAATCTTG 92547 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| ||| | ||||||||||| |||||| || | ||| | ||| |||||||| Sbjct 92546 GCCTTGACATTTTCGATGGTGTCGGAAGGCTCGACGTCCAAAGTGATCGTCTTGCCGGTG 92487 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 || || || || ||||| ||||| Sbjct 92486 AGCGTCTTCACGAAAATCTGCAT 92464 >seq2236 Length=21742 Score = 91.5 bits (100), Expect = 1e-13 Identities = 114/153 (75%), Gaps = 4/153 (3%) Strand=Plus/Minus Query 123604 TCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGA 123663 |||| || || |||||||||||||| ||||||||||| ||||| |||| | ||| |||| Sbjct 12209 TCGAGACGGGGACGCCGTACATGCTGTACAAAGACGCATGCAATCGGAAGAGCAACCAGA 12150 Query 123664 GCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATG 123723 ||||||||||| || || || || || | ||| | ||| | ||||||| | ||| | Sbjct 12149 AGAACTTGGGAACGATCAAGTGCAGCAACTTGTGCACAGAAGTCGTCGAATATA-CGA-G 12092 Query 123724 C--CGATCAAGTGGCCGTGTGTAATTTGGCTTC 123754 | || | ||||| || || || ||||| || Sbjct 12091 CAAAGACGAGGTGGCTGTCTGCAACTTGGCCTC 12059 >seq1346 Length=13467 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||||||||| || | ||| || | || || || || ||||| || || || || ||| Sbjct 13327 ATTCCTCCGCGAAGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCG 13268 Query 45171 CTGACGGTTTTAG--AATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | || | || ||||| || || || || | |||| || ||||| || | Sbjct 13267 --GACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAG 13210 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287 | ||||| ||||| || || || || ||| || | || | || | |||||| || | | Sbjct 13209 GGGGAATACCTTCCTTGTCCTGGATCTTTGCCTTCA-CGTTCTCGATGGTGTCTGACGGC 13151 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || | || || ||||| ||||| || ||||| || ||||| Sbjct 13150 TCAACATCAAGCGTGATGGTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCAT 13098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451970898721320