Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2236 140 4e-28 >seq2236 Length=21742 Score = 140 bits (154), Expect = 4e-28 Identities = 253/362 (70%), Gaps = 6/362 (2%) Strand=Plus/Plus Query 106280 TCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCA 106339 || ||||||||||| || |||||||| | ||||| ||| |||| || ||| ||| Sbjct 11870 TCTGCGAGACCTTGGACTCCCAAACCGACAGGTCGGTGCCGCAAGTTGCTCTTCTTCGCT 11929 Query 106340 GTCTCA-ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTT 106398 ||| || || || | |||| || || || ||||| | ||| | || | | ||| Sbjct 11930 -TCTGGGACTGGGTAGTAGTTTCGATCGATCACGCGGTTCAAGTTTCTCGTCATGA-CTT 11987 Query 106399 TGT-GATTT-CATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTT 106456 || |||| | | |||| || | || || ||||| || |||| | || |||| Sbjct 11988 TGACGATTCGCTTCAAGTGTT-CGTAGTCGAAAGTTCGGCTCTCGCGGTCCACGAACTTG 12046 Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || || | || || ||||| ||||| |||||| ||| || || || || || | Sbjct 12047 GGCAGCGAGACGGAGGCCAAGTTGCAGACAGCCACCTCGTCTTTGCTCGTATATTCGACG 12106 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 | |||||| ||||||||| | ||| ||||| ||||| ||||| ||||| ||||| Sbjct 12107 ACTTCTGTGCACAAGTTGCTGCACTTGATCGTTCCCAAGTTCTTCTGGTTGCTCTTCCGA 12166 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 ||||| || || ||||| |||||||| |||||||||||||| |||| | || |||||| Sbjct 12167 TTGCATGCGTCTTTGTACAGCATGTACGGCGTCCCCGTCTCGATCTGCGCCTGGAGAATC 12226 Query 106637 GC 106638 || Sbjct 12227 GC 12228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589938638497080