Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq1347 107 1e-18 seq1348 105 4e-18 seq1346 104 2e-17 >seq1347 Length=520 Score = 107 bits (118), Expect = 1e-18 Identities = 165/234 (71%), Gaps = 10/234 (4%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | | |||||||||||| | || || ||||||||||| ||||| | Sbjct 230 TTCCTCCGCGAAGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGG 171 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || |||| | || |||| ||| || || ||||| || || || ||||| || | | Sbjct 170 ACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGG 111 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACG-----GATGCTATCGATTCACCGGC 34927 | | || |||||||| ||||| || ||| |||| |||| | || | Sbjct 110 GAATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTATC---TGAC--GG 56 Query 34928 CTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||||||| | || ||||| || || || ||||||||||||||||||||||| Sbjct 55 CTCAACATCAAGCGTGATGGTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCAT 2 Score = 107 bits (118), Expect = 1e-18 Identities = 165/234 (71%), Gaps = 10/234 (4%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | | |||||||||||| | || || ||||||||||| ||||| | Sbjct 458 TTCCTCCGCGAAGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGG 399 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || |||| | || |||| ||| || || ||||| || || || ||||| || | | Sbjct 398 ACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGG 339 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACG-----GATGCTATCGATTCACCGGC 34927 | | || |||||||| ||||| || ||| |||| |||| | || | Sbjct 338 GAATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTATC---TGAC--GG 284 Query 34928 CTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||||||| | || ||||| || || || ||||||||||||||||||||||| Sbjct 283 CTCAACATCAAGCGTGATGGTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCAT 230 >seq1348 Length=13918 Score = 105 bits (116), Expect = 4e-18 Identities = 155/218 (71%), Gaps = 10/218 (5%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 |||||||||||| | || || ||||||||||| ||||| || || |||| | || Sbjct 287 CAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTTCGGCCGTC 228 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||| ||| || || ||||| || || || ||||| || | || | || |||||||| Sbjct 227 CTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTC 168 Query 34889 GCTAATCTTCTGTTTGACG-----GATGCTATCGATTCACCGGCCTCAACATCGACGGTT 34943 ||||| || ||| |||| |||| | || | ||||||||| | || Sbjct 167 CTGGATCTTTGCCTTCACGTTCTCGATGGTATC---TGAC--GGCTCAACATCAAGCGTG 113 Query 34944 ATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| || || || ||||||||||||||||||||||| Sbjct 112 ATGGTCTTCCCAGTAAGAGTCTTCACAAAGATCTGCAT 75 >seq1346 Length=13467 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| | | | |||||||||||| | || || ||||||||||| ||||| | Sbjct 13326 TTCCTCCGCGAAGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGG 13267 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | || |||| | || |||| ||| || || ||||| || || || ||||| || | | Sbjct 13266 ACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGG 13207 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || |||||||| ||||| || ||| | || | || | ||||| Sbjct 13206 GAATACCTTCCTTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTGTCTGACGGCTCAA 13147 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 |||| | || ||||| || || || ||||||||||||||||||||||| || Sbjct 13146 CATCAAGCGTGATGGTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCATTTT 13095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324610980849576