Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Toxoplasma_20gondii_20[genbank_20GCA_5F000256705.1_202012-03-27] 5,717 sequences; 63,046,945 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1348 118 8e-22 seq1347 118 8e-22 seq1346 118 8e-22 >seq1348 Length=13918 Score = 118 bits (130), Expect = 8e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| ||||| || || || ||| || ||||| ||||| || || ||| |||| Sbjct 292 AGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTTCGG 233 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||||||||| || ||||| ||||| ||||| ||||| | ||||| || ||| Sbjct 232 CCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCC 173 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || | | | ||||||| ||| || || | ||| Sbjct 172 TTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAACATCAAGCGTG 113 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||| || ||||| |||||||| Sbjct 112 ATGGTCTTCCCAGTAAGAGTCTTCACAAAGATCTGCAT 75 >seq1347 Length=520 Score = 118 bits (130), Expect = 8e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| ||||| || || || ||| || ||||| ||||| || || ||| |||| Sbjct 219 AGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTTCGG 160 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||||||||| || ||||| ||||| ||||| ||||| | ||||| || ||| Sbjct 159 CCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCC 100 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || | | | ||||||| ||| || || | ||| Sbjct 99 TTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAACATCAAGCGTG 40 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||| || ||||| |||||||| Sbjct 39 ATGGTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCAT 2 Score = 118 bits (130), Expect = 8e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| ||||| || || || ||| || ||||| ||||| || || ||| |||| Sbjct 447 AGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTTCGG 388 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||||||||| || ||||| ||||| ||||| ||||| | ||||| || ||| Sbjct 387 CCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCC 328 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || | | | ||||||| ||| || || | ||| Sbjct 327 TTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTATCTGACGGCTCAACATCAAGCGTG 268 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||| || ||||| |||||||| Sbjct 267 ATGGTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCAT 230 >seq1346 Length=13467 Score = 118 bits (130), Expect = 8e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| ||||| || || || ||| || ||||| ||||| || || ||| |||| Sbjct 13315 AGACGCAAAACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTTCGG 13256 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| ||||||||||| || ||||| ||||| ||||| ||||| | ||||| || ||| Sbjct 13255 CCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCC 13196 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || | | | ||||||| ||| || || | ||| Sbjct 13195 TTGTCCTGGATCTTTGCCTTCACGTTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTG 13136 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||| || ||||| |||||||| Sbjct 13135 ATGGTCTTCCCGGTAAGAGTCTTCACAAAGATCTGCAT 13098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380911057815591